Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    27   1.3  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    26   3.0  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   3.9  
SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...    25   6.8  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    25   6.8  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   6.8  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    25   9.0  
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    25   9.0  
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +2

Query: 8   QAQGVVLVRDVGSVKGCVMIMPSNESQVVKLIVIPNLQEFCGIVCAS 148
           +A  VVLV  + +  GC ++  S++SQV+ L+      +F G++  S
Sbjct: 175 KACAVVLVEFLATRLGCYLLNISSQSQVLDLLAFSG-YKFVGLILTS 220


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 360 SLICKCTSSYLNIFEFKIMPAKHFPVYMIII 452
           SL CK ++S L++ +FK      F V+M I+
Sbjct: 55  SLACKLSASILHVHKFKFAKRIGFCVFMSIL 85


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 495 STFILVSKLSNLHEK**SCKLENVLQA*F*IRICSNSLMYICILMK 358
           +++I ++K+S +     S  ++ V    F  RICSNSL Y  + M+
Sbjct: 679 NSYISLAKMSEIR----SLNVQTVSVKGFPRRICSNSLFYFVLCMQ 720


>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 287 SEYSLLINSIIVKKKLISKRVVHYFINMQMY 379
           S ++L +N +I K+KL  +  V Y++N  +Y
Sbjct: 304 SSFTLAVN-VIAKRKLDDEEKVMYYVNDGVY 333


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 59  VMIMPSNESQVVKLIVIPNLQEFCGIVC 142
           V+++  N +    L V+P++  FC +VC
Sbjct: 118 VLLLRPNYTMFPMLNVVPSITFFCSLVC 145


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 470 YQIFMKNNNHVNWKMFCRHNFKFEYVQ 390
           YQ+F  N++      F R  F FEY Q
Sbjct: 435 YQLFENNDSVTRLLNFARARFPFEYSQ 461


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 17/51 (33%), Positives = 22/51 (43%)
 Frame = -2

Query: 256 IFTLKEIFWFSFKYALKMRTVSFSY*S*IYDSHIQLRSTHNTTKFLKIWYN 104
           +F+ K +  F FK       +SF     + DS IQL ST     F   W N
Sbjct: 179 LFSDKGLADFFFKTHFLFSQLSFECIPHLSDSSIQLSSTSPVIPFTLKWNN 229


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 112 KSSRILWYCVCFLIEYVNHRFNFN 183
           K+S + W CV  LI+Y +  F ++
Sbjct: 409 KASELKWRCVRSLIDYKDAEFTYD 432


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 515 LHLYP*EVHLY*LVNYQIFMKNNNHVNWKMFCRHNFKFE 399
           LH +    HL   V Y +  +    ++W    R N KFE
Sbjct: 121 LHPFKRNRHLLSFVPYPMTAETLGDISWSFSRRENMKFE 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,365
Number of Sequences: 5004
Number of extensions: 37207
Number of successful extensions: 73
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)