Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H05f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5)                   29   2.3  
SB_58462| Best HMM Match : Got1 (HMM E-Value=0.28)                     27   7.1  
SB_47023| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_37834| Best HMM Match : TB (HMM E-Value=5.5)                        27   7.1  
SB_23702| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-11)          27   7.1  
SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_21382| Best HMM Match : Ail_Lom (HMM E-Value=2.5)
          Length = 473

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/55 (34%), Positives = 22/55 (40%)
 Frame = +2

Query: 155 VADSLTGDYKSQQEERNGDLVQGSYSLVEPDGTRRVVDYAADSINGFNAVVRKEP 319
           V DS  GDY    +   GD V+ S S     G    V YAA    G  A+    P
Sbjct: 187 VCDSFQGDYARVSDSFQGDYVRVSDSFQSFQGDYARVRYAAAGFFGRQAIDDSRP 241


>SB_58462| Best HMM Match : Got1 (HMM E-Value=0.28)
          Length = 339

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/55 (21%), Positives = 28/55 (50%)
 Frame = -2

Query: 343 NCRRSRHEWLFTYYGIETINGVSGVVHDTTCAVGFNQRVRSLNQISIAFFLLTFV 179
           +C+  +   +F ++G   +NG+  V       V  + ++  ++ + +AFF L+ V
Sbjct: 175 HCKLFKTAAVFAFFGSVVLNGIVPVSLLCAAVVTSSYKLLQMDYVPLAFFFLSLV 229


>SB_47023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 122 DPLPQYRFGYDVADSLTGDYKSQQEERNG 208
           D  PQ+   Y+V  SLTGD     E+ NG
Sbjct: 3   DDFPQWVTKYNVNYSLTGDQWQSYEDENG 31


>SB_37834| Best HMM Match : TB (HMM E-Value=5.5)
          Length = 131

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 286 NGVSGVVHDTTCAVGFNQRVRSLNQISIAF 197
           NGVS  V D+ C +  +  VR++++ S+AF
Sbjct: 53  NGVSENVLDSDCLIAASSFVRTVDKTSVAF 82


>SB_23702| Best HMM Match : F5_F8_type_C (HMM E-Value=3.7e-11)
          Length = 187

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 122 DPLPQYRFGYDVADSLTGDYKSQQEERNG 208
           D  PQ+   Y+V  SLTGD     E+ NG
Sbjct: 156 DDFPQWVTKYNVNYSLTGDQWQSYEDENG 184


>SB_23154| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1051

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
 Frame = -1

Query: 272 RSPRHDVCRRVQ-PKSKILEPNLHCVLLVDFCNHRLKSPLH 153
           + P H +   V  P+  + +PN    LLV    H +K P H
Sbjct: 507 KQPNHSIALLVTIPRHTMKQPNHSIALLVTIPRHTMKQPNH 547


>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 364 YYCGLCNNCRRSRHEWLFTYYGIETINGVSG 272
           Y   L   C R   E  FTY+G++  +G +G
Sbjct: 500 YMTDLICRCARKAVEKRFTYFGVQNYDGTTG 530


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,194,330
Number of Sequences: 59808
Number of extensions: 177848
Number of successful extensions: 565
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)