Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H05f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine re...    27   6.2  
AC024841-2|AAK68540.1|  300|Caenorhabditis elegans Hypothetical ...    27   8.1  
AC024841-1|AAK68541.1|  300|Caenorhabditis elegans Hypothetical ...    27   8.1  

>AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein40 protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 346 NNCRRSRHEWLFTYYGIETINGVSGVVHDTTCAVGF 239
           N    SR+ W+F Y  +  I   +  V  T C VGF
Sbjct: 14  NFSEESRNFWVFIYLKVRCIRFYADFVSFTICFVGF 49


>AC024841-2|AAK68540.1|  300|Caenorhabditis elegans Hypothetical
           protein Y59H11AM.2 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 331 SRHEWLFTYYGIETINGVSGVVHDTTCAVGFNQRVRSL 218
           SR  W F YYG  T++ ++G +     A G  Q   S+
Sbjct: 120 SRAYWTFRYYGYTTVSVLNGGIEAFKLAQGVVQSGESM 157


>AC024841-1|AAK68541.1|  300|Caenorhabditis elegans Hypothetical
           protein Y59H11AM.3 protein.
          Length = 300

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 331 SRHEWLFTYYGIETINGVSGVVHDTTCAVGFNQRVRSL 218
           SR  W F YYG  T++ ++G +     A G  Q   S+
Sbjct: 120 SRAYWTFRYYGYTTVSVLNGGIEAFKLAQGVVQSGESM 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,187,168
Number of Sequences: 27780
Number of extensions: 128292
Number of successful extensions: 415
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)