Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306H04f
(308 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 25 1.9
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 25 2.6
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 3.4
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 24 5.9
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce... 24 5.9
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 24 5.9
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po... 24 5.9
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 23 7.9
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 23 7.9
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 23 7.9
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 23 7.9
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 1.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 107 KAKKLNRILEDPFIDLHATSSL 42
+ KK +RIL+ P +DL+A +L
Sbjct: 191 RIKKFSRILDAPIVDLNALRTL 212
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.0 bits (52), Expect = 2.6
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 248 GELGTGPPLEEKMNVDQSSDEEDDVIKLNGPYAPRATE 135
G LG PL E +++EEDD + A +T+
Sbjct: 96 GLLGKATPLSEDRKPTSNNEEEDDADEAKSSNADSSTD 133
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.6 bits (51), Expect = 3.4
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 164 NGPYAPRATELWTPNYEAVKAKKLNRILEDPFIDLHATSSL 42
+GPY R LW +A+++ + IL H S+L
Sbjct: 2296 SGPYLGRTLWLWLGVLDAIQSVGIGMILLQTLTRRHVASTL 2336
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 23.8 bits (49), Expect = 5.9
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -1
Query: 143 ATELWTPNYEAVKAKKLNRILEDPFI 66
A E ++PN+E+ + + +NR+ D F+
Sbjct: 626 AAEEYSPNWESEELRLVNRLDVDSFL 651
>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 481
Score = 23.8 bits (49), Expect = 5.9
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = -1
Query: 233 GPPLEEKMNVDQSSDEEDDVIKLNGPYAP 147
GP EEK+ ++ ++ + + N PY P
Sbjct: 56 GPAFEEKIRQNEQANTKFAFLHANDPYHP 84
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 23.8 bits (49), Expect = 5.9
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -1
Query: 218 EKMNVDQSSDEEDDVIKLNGP 156
EK +VD+S E DD IK +GP
Sbjct: 965 EKPSVDESITEVDDAIK-DGP 984
>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 742
Score = 23.8 bits (49), Expect = 5.9
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -1
Query: 203 DQSSDEEDDVIKLNGPYAPRATELWTPNYEAVKAKK 96
D +D+ED K A R+ + ++E+++AKK
Sbjct: 158 DAENDDEDLQKKKERKRAQRSVKTLVKDFESIRAKK 193
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 23.4 bits (48), Expect = 7.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 191 DEEDDVIKLNGPYAPRATELWTPNYEAVKAKKLNRILE 78
DEE V K N P A +A+ A+ + ++LE
Sbjct: 665 DEETTVNKPNKPITKEAVLALREKMKALNARPIKKVLE 702
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 23.4 bits (48), Expect = 7.9
Identities = 11/54 (20%), Positives = 25/54 (46%)
Frame = -1
Query: 233 GPPLEEKMNVDQSSDEEDDVIKLNGPYAPRATELWTPNYEAVKAKKLNRILEDP 72
GP + E++ SS D + PR+T++ +++ + + + +E P
Sbjct: 646 GPSIFEELRKLNSSKRVSDRVLYQSSATPRSTDVSPTRPDSISSVRSHTAVESP 699
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 23.4 bits (48), Expect = 7.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = -2
Query: 286 KRRPVNCNTTHYRANWVPGPPS 221
+ +P N H + VPGPP+
Sbjct: 886 ENKPAESNLNHLTSAKVPGPPA 907
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 23.4 bits (48), Expect = 7.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 239 GTGPPLEEKMNVDQSSDEEDDVIKLN 162
G GP + EKM + + + + VI LN
Sbjct: 490 GRGPGMLEKMYLSEKASAPERVISLN 515
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,113,979
Number of Sequences: 5004
Number of extensions: 19826
Number of successful extensions: 70
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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