Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306H04f
(308 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317... 29 0.98
02_03_0138 - 15629421-15629440,15629521-15629752,15630115-156303... 28 1.3
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758... 27 2.3
08_02_0721 + 20401217-20401360,20401689-20401809,20401969-204020... 27 3.0
08_02_0059 - 11778739-11780998,11781744-11781751 27 4.0
08_02_1545 - 27790328-27790358,27790512-27791110,27791428-277916... 26 6.9
06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196... 26 6.9
08_02_0692 + 20080929-20081484,20081932-20081998,20082141-200824... 25 9.2
01_06_1825 + 40161238-40161427,40162153-40162233,40162751-40163175 25 9.2
>07_03_1573 +
27829967-27830338,27830821-27831510,27831594-27831781,
27832286-27832318,27832364-27832605,27833178-27833320,
27833649-27833825,27834104-27834256,27834639-27834694,
27834998-27835157,27835301-27835348
Length = 753
Score = 28.7 bits (61), Expect = 0.98
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 215 KMNVDQSSDEEDDVIKLNGPYAPRATELWTPNYEAVKAKKLNRI 84
+M+ S DD I L G + T+LW PN A K ++L+ I
Sbjct: 111 EMSGGGGSSSSDDQILLFGSFTEAETKLWQPN--ANKTRELSEI 152
>02_03_0138 -
15629421-15629440,15629521-15629752,15630115-15630348,
15630486-15630709,15631225-15631509,15631549-15631690
Length = 378
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -1
Query: 239 GTGPPLEEKMNVDQSSDEEDDVI 171
GT P E+K NVD ++ + DD++
Sbjct: 307 GTNEPCEDKENVDPNAQQRDDLL 329
>02_02_0184 -
7581345-7581769,7581880-7582296,7582891-7583661,
7583894-7584437,7584794-7584961,7585019-7585101,
7585190-7585631
Length = 949
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = -1
Query: 242 LGTGPPLEEKMNVDQSSDEEDDVIKLNGPYAPRATELWTPNYEA 111
L PP +N D ++++D ++ L+G P+ PN A
Sbjct: 673 LDPAPPSLRDLNADPPAEDDDHIVHLHGEPLPQPPYFPEPNAAA 716
>08_02_0721 +
20401217-20401360,20401689-20401809,20401969-20402067,
20402790-20402851,20403680-20403797,20404004-20404343,
20404435-20404582,20405043-20405144,20405240-20405359,
20405812-20405895,20405974-20406101,20408314-20408389,
20408556-20408631,20408800-20408876,20408975-20409031,
20409411-20409555,20409634-20409806,20409928-20410054,
20410090-20410192,20410492-20410688,20410946-20411097
Length = 882
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 218 EKMNVDQSSDEEDDVIKLNGPYAPRATELWTP 123
E+ N+++ DEED L P P ++ TP
Sbjct: 584 EECNLEEVLDEEDPTRSLKDPKKPNVPDIGTP 615
>08_02_0059 - 11778739-11780998,11781744-11781751
Length = 755
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 116 EAVKAKKLNRILEDPFIDLH 57
E+ K K+LNRIL F DLH
Sbjct: 235 ESAKEKRLNRILSLSFDDLH 254
>08_02_1545 -
27790328-27790358,27790512-27791110,27791428-27791648,
27791852-27792071
Length = 356
Score = 25.8 bits (54), Expect = 6.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 191 DEEDDVIKLNGPYAPRATELWTPNYE 114
D+E++ I+ GPY + +WT E
Sbjct: 316 DDEEECIRQQGPYELQVKVVWTAGLE 341
>06_03_1180 +
28218386-28218649,28218725-28219202,28219309-28219697,
28219785-28220426,28220466-28221368
Length = 891
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -1
Query: 230 PPLEEKMNVDQSSDEEDDVIKL 165
P L++K +V SSD++DD ++L
Sbjct: 303 PKLKKKKSVKPSSDDDDDDVEL 324
>08_02_0692 +
20080929-20081484,20081932-20081998,20082141-20082474,
20082835-20083068,20083158-20083319
Length = 450
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -1
Query: 239 GTGPPLEEKMNVDQSSDEEDDVI 171
GT P E+K N+D ++ DD++
Sbjct: 331 GTHEPYEDKENIDPNAQHGDDLL 353
>01_06_1825 + 40161238-40161427,40162153-40162233,40162751-40163175
Length = 231
Score = 25.4 bits (53), Expect = 9.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 194 SDEEDDVIKLNGPYAPRATELWTPNYE 114
SD EDD +NG + P TPNY+
Sbjct: 79 SDCEDDFYSVNGDFTPSRGS--TPNYQ 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,221,172
Number of Sequences: 37544
Number of extensions: 126656
Number of successful extensions: 358
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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