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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H04f
         (308 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    29   0.98 
02_03_0138 - 15629421-15629440,15629521-15629752,15630115-156303...    28   1.3  
02_02_0184 - 7581345-7581769,7581880-7582296,7582891-7583661,758...    27   2.3  
08_02_0721 + 20401217-20401360,20401689-20401809,20401969-204020...    27   3.0  
08_02_0059 - 11778739-11780998,11781744-11781751                       27   4.0  
08_02_1545 - 27790328-27790358,27790512-27791110,27791428-277916...    26   6.9  
06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196...    26   6.9  
08_02_0692 + 20080929-20081484,20081932-20081998,20082141-200824...    25   9.2  
01_06_1825 + 40161238-40161427,40162153-40162233,40162751-40163175     25   9.2  

>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 215 KMNVDQSSDEEDDVIKLNGPYAPRATELWTPNYEAVKAKKLNRI 84
           +M+    S   DD I L G +    T+LW PN  A K ++L+ I
Sbjct: 111 EMSGGGGSSSSDDQILLFGSFTEAETKLWQPN--ANKTRELSEI 152


>02_03_0138 -
           15629421-15629440,15629521-15629752,15630115-15630348,
           15630486-15630709,15631225-15631509,15631549-15631690
          Length = 378

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 239 GTGPPLEEKMNVDQSSDEEDDVI 171
           GT  P E+K NVD ++ + DD++
Sbjct: 307 GTNEPCEDKENVDPNAQQRDDLL 329


>02_02_0184 -
           7581345-7581769,7581880-7582296,7582891-7583661,
           7583894-7584437,7584794-7584961,7585019-7585101,
           7585190-7585631
          Length = 949

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -1

Query: 242 LGTGPPLEEKMNVDQSSDEEDDVIKLNGPYAPRATELWTPNYEA 111
           L   PP    +N D  ++++D ++ L+G   P+      PN  A
Sbjct: 673 LDPAPPSLRDLNADPPAEDDDHIVHLHGEPLPQPPYFPEPNAAA 716


>08_02_0721 +
           20401217-20401360,20401689-20401809,20401969-20402067,
           20402790-20402851,20403680-20403797,20404004-20404343,
           20404435-20404582,20405043-20405144,20405240-20405359,
           20405812-20405895,20405974-20406101,20408314-20408389,
           20408556-20408631,20408800-20408876,20408975-20409031,
           20409411-20409555,20409634-20409806,20409928-20410054,
           20410090-20410192,20410492-20410688,20410946-20411097
          Length = 882

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 218 EKMNVDQSSDEEDDVIKLNGPYAPRATELWTP 123
           E+ N+++  DEED    L  P  P   ++ TP
Sbjct: 584 EECNLEEVLDEEDPTRSLKDPKKPNVPDIGTP 615


>08_02_0059 - 11778739-11780998,11781744-11781751
          Length = 755

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 116 EAVKAKKLNRILEDPFIDLH 57
           E+ K K+LNRIL   F DLH
Sbjct: 235 ESAKEKRLNRILSLSFDDLH 254


>08_02_1545 -
           27790328-27790358,27790512-27791110,27791428-27791648,
           27791852-27792071
          Length = 356

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 191 DEEDDVIKLNGPYAPRATELWTPNYE 114
           D+E++ I+  GPY  +   +WT   E
Sbjct: 316 DDEEECIRQQGPYELQVKVVWTAGLE 341


>06_03_1180 +
           28218386-28218649,28218725-28219202,28219309-28219697,
           28219785-28220426,28220466-28221368
          Length = 891

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 230 PPLEEKMNVDQSSDEEDDVIKL 165
           P L++K +V  SSD++DD ++L
Sbjct: 303 PKLKKKKSVKPSSDDDDDDVEL 324


>08_02_0692 +
           20080929-20081484,20081932-20081998,20082141-20082474,
           20082835-20083068,20083158-20083319
          Length = 450

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 239 GTGPPLEEKMNVDQSSDEEDDVI 171
           GT  P E+K N+D ++   DD++
Sbjct: 331 GTHEPYEDKENIDPNAQHGDDLL 353


>01_06_1825 + 40161238-40161427,40162153-40162233,40162751-40163175
          Length = 231

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 194 SDEEDDVIKLNGPYAPRATELWTPNYE 114
           SD EDD   +NG + P      TPNY+
Sbjct: 79  SDCEDDFYSVNGDFTPSRGS--TPNYQ 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,221,172
Number of Sequences: 37544
Number of extensions: 126656
Number of successful extensions: 358
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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