Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H04f
         (308 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55376-5|AAA98007.1|  501|Caenorhabditis elegans Hypothetical pr...    28   1.2  
Z81115-6|CAD45598.1|  630|Caenorhabditis elegans Hypothetical pr...    28   1.5  
Z78198-5|CAB01571.1|  437|Caenorhabditis elegans Hypothetical pr...    28   1.5  
AL032658-6|CAA21747.2|  630|Caenorhabditis elegans Hypothetical ...    28   1.5  
Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical pr...    27   2.0  
AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical ...    27   2.0  
U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical pr...    27   3.5  
AF047657-4|AAK18948.3|  330|Caenorhabditis elegans Serpentine re...    27   3.5  
Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical pr...    26   4.7  
U42832-3|AAA83573.2|  361|Caenorhabditis elegans Tetraspanin fam...    26   6.2  
Z79755-7|CAB02103.1|  466|Caenorhabditis elegans Hypothetical pr...    25   8.1  
Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical pr...    25   8.1  
AF067616-7|AAM98029.1|  423|Caenorhabditis elegans Hypothetical ...    25   8.1  
AF067616-6|AAC19192.1|  520|Caenorhabditis elegans Hypothetical ...    25   8.1  

>U55376-5|AAA98007.1|  501|Caenorhabditis elegans Hypothetical
           protein F16H11.1 protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 170 KLNGPYAPRATELWTPNYEAVKAKKLNRI 84
           KL+   A +  ELWTP Y+A+K  +++ I
Sbjct: 417 KLSNGIAYQLIELWTPAYDALKPHEVSAI 445


>Z81115-6|CAD45598.1|  630|Caenorhabditis elegans Hypothetical
           protein Y76A2B.6 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -1

Query: 239 GTGPPLEEKMNVDQSSDEEDDVIK-LNGPYAPRATELWTPNYEAVKAKKLNRILEDPFID 63
           GTG  + E   +D  +   DD+ K L+   +P   E W    E++K K  +  L  PF+ 
Sbjct: 243 GTGSKVYE---IDDGTRNPDDLGKILSYDESPILDETWWSTDESLKIKGTDGSLFHPFLS 299

Query: 62  LHATSSLFGI*LC 24
            H    ++   LC
Sbjct: 300 KHEKLYVYVAELC 312


>Z78198-5|CAB01571.1|  437|Caenorhabditis elegans Hypothetical
           protein F55C5.6 protein.
          Length = 437

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = -1

Query: 242 LGTGPPLEEKMNVDQSSDEEDDVIKLNGPYAPRATELWTPNYEAVKAKKLNRILEDPFID 63
           LGT   +  K+ V+Q++ E+D ++     +A      W      +K  +L+ +  +  I 
Sbjct: 278 LGTTLRISGKIEVNQTTLEDDFMVFEPSSWAKNILVAWVAGNGPMKIAELSDVQLNEIIS 337

Query: 62  LHATSSLFGI 33
            H T++L  I
Sbjct: 338 KHLTTNLKNI 347


>AL032658-6|CAA21747.2|  630|Caenorhabditis elegans Hypothetical
           protein Y76A2B.6 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -1

Query: 239 GTGPPLEEKMNVDQSSDEEDDVIK-LNGPYAPRATELWTPNYEAVKAKKLNRILEDPFID 63
           GTG  + E   +D  +   DD+ K L+   +P   E W    E++K K  +  L  PF+ 
Sbjct: 243 GTGSKVYE---IDDGTRNPDDLGKILSYDESPILDETWWSTDESLKIKGTDGSLFHPFLS 299

Query: 62  LHATSSLFGI*LC 24
            H    ++   LC
Sbjct: 300 KHEKLYVYVAELC 312


>Z68113-3|CAA92150.1|  333|Caenorhabditis elegans Hypothetical
           protein E03G2.4 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -1

Query: 248 GELGTGPPLEEKMNVDQSSDEEDDVIKLNGPYAPRATELWTPNYE 114
           G+   GPP     +    SD E  +   +GP APRAT    PN++
Sbjct: 142 GQSPPGPPGRPGSDGSPGSDGEAGIPGRDGPDAPRATP--APNFD 184


>AC024755-1|AAF59637.2|  369|Caenorhabditis elegans Hypothetical
           protein Y34B4A.7 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -1

Query: 245 ELGTGPPLEEKMNVDQSSDEEDDVIKLNGPYAPRA-----TELWTPNYEAVKAKKLNRIL 81
           E   G  +E  M V    DE D +++L  P   R      T +W  ++ +++A+ +  ++
Sbjct: 100 ETELGQMVERHMYVKGFEDESDTIVRLI-PQGDRTFEYSDTRMWKVDHLSIRAQYIAALI 158

Query: 80  EDPFI 66
             PFI
Sbjct: 159 SAPFI 163


>U39653-1|AAM69065.2| 2471|Caenorhabditis elegans Hypothetical
           protein T13H2.5a protein.
          Length = 2471

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 218 EKMNVDQSSDEEDDVIKLNGPYAPRATE 135
           E+  +++    E++V+K+  P AP ATE
Sbjct: 887 EEEEIEEEETPEEEVVKVASPTAPIATE 914


>AF047657-4|AAK18948.3|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein240 protein.
          Length = 330

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 25  HNQIPNNELVACKSMNGSSSILLSFFA 105
           HNQ+ NN  +   S+NG  S ++  FA
Sbjct: 267 HNQVINNIALLVVSLNGIGSTIIMLFA 293


>Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical
           protein F36G9.5 protein.
          Length = 327

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +3

Query: 45  RTRRVQVYERI-FKYSVKFLCF--DGFVIRCPEFGC--SWCIGAV*FYYIIFFIARLIYV 209
           R   VQ++  I   + + FL F  + F +R P  G   SWC       Y+I FI  + Y+
Sbjct: 63  RNVNVQLFGVITLSHYMSFLFFIAEFFYLRLPLAGAFTSWCASVQPNGYLIIFIIIVFYI 122

Query: 210 HF 215
           ++
Sbjct: 123 NY 124


>U42832-3|AAA83573.2|  361|Caenorhabditis elegans Tetraspanin family
           protein 16 protein.
          Length = 361

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 169 N*TAPMHQEQPNSGHRITKPSKQRNLTEYLK 77
           N TAP   E+ N  HR  K    RNLT++++
Sbjct: 213 NPTAPHIMEEWNKAHRQFKCCGVRNLTDFVE 243


>Z79755-7|CAB02103.1|  466|Caenorhabditis elegans Hypothetical
           protein F43G9.10 protein.
          Length = 466

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 221 EEKMNVDQSSDEEDD-VIKLNGPYAPRATELWTPNYEAVKAKKLNRILED 75
           EE+ + ++ SDE+DD V +L   +  +   +     E  K K++ + +ED
Sbjct: 205 EEESSEEEDSDEDDDPVPRLKPIFTRKKDRITLQEAEKEKEKEILKKIED 254


>Z68132-2|CAA92220.2|  762|Caenorhabditis elegans Hypothetical
           protein F09C8.2 protein.
          Length = 762

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 140 TELWTPNYEAVKAKKLNRILEDP 72
           T L TPN +A+  KKL+ ++ +P
Sbjct: 357 TPLLTPNSDALLQKKLSEVVHNP 379


>AF067616-7|AAM98029.1|  423|Caenorhabditis elegans Hypothetical
           protein F29C4.7b protein.
          Length = 423

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -2

Query: 124 RITKPSKQRNLTEYLKIRS*TCTRRVRYLEFDYVYSILSK 5
           ++ K  ++     Y+      C R+VRY   D + S+L K
Sbjct: 67  KVVKNPEEDERLAYVNFERNDCARKVRYTLMDRLKSVLGK 106


>AF067616-6|AAC19192.1|  520|Caenorhabditis elegans Hypothetical
           protein F29C4.7a protein.
          Length = 520

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -2

Query: 124 RITKPSKQRNLTEYLKIRS*TCTRRVRYLEFDYVYSILSK 5
           ++ K  ++     Y+      C R+VRY   D + S+L K
Sbjct: 67  KVVKNPEEDERLAYVNFERNDCARKVRYTLMDRLKSVLGK 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,281,250
Number of Sequences: 27780
Number of extensions: 116093
Number of successful extensions: 397
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)