Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H04f
         (308 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31430.1 68415.m03840 invertase/pectin methylesterase inhibit...    28   1.5  
At2g24050.1 68415.m02873 MIF4G domain-containing protein / MA3 d...    26   4.5  
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea...    26   4.5  
At5g41780.1 68418.m05087 myosin heavy chain-related weak similar...    26   5.9  
At1g03540.1 68414.m00335 pentatricopeptide (PPR) repeat-containi...    26   5.9  

>At2g31430.1 68415.m03840 invertase/pectin methylesterase inhibitor
           family protein low similarity to pistil-specific gene
           sts15 [Solanum tuberosum] GI:1616628; contains Pfam
           profile PF04043: Plant invertase/pectin methylesterase
           inhibitor
          Length = 179

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 221 EEKMNVDQSSDEEDDVI-KLNGPYAPRATELWTPNYEAVKAK 99
           + KM VD ++   D V  K NGP+  R  E+   NY    A+
Sbjct: 70  QSKMQVDDATTHIDRVRRKFNGPHGRRRIEVCKTNYGIASAR 111


>At2g24050.1 68415.m02873 MIF4G domain-containing protein / MA3
           domain-containing protein similar to SP|Q03387
           Eukaryotic initiation factor (iso)4F subunit P82-34
           (eIF-(iso)4F P82-34) {Triticum aestivum}; contains Pfam
           profiles PF02854: MIF4G domain, PF02847: MA3 domain
          Length = 747

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 131 WTPNYEAVKAKKLNRI 84
           W P  E VKAKK+N I
Sbjct: 401 WVPRREEVKAKKINEI 416


>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
           family protein similar to Transcriptional repressor
           rco-1 (SP:P78706) [Neurospora crassa]; similar to
           TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
          Length = 648

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -1

Query: 248 GELGTGPPLEEKMNVDQSSDEEDDVIKLNGPYAPR 144
           G++  GPP        Q  +EED+ + +  P  P+
Sbjct: 85  GDVAMGPPPPPSSKRTQEEEEEDEEVMMGPPPPPK 119


>At5g41780.1 68418.m05087 myosin heavy chain-related weak similarity
           to  M protein, serotype 5 precursor (SP:P02977)
           {Streptococcus pyogenes} and to Myosin heavy chain,
           non-muscle (SP:Q99323) (Zipper protein) (Myosin II)
           {Drosophila melanogaster}
          Length = 537

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/52 (15%), Positives = 31/52 (59%)
 Frame = -3

Query: 171 KIKRPLCTKSNRTLDTELRSRQSKET*QNT*RSVHRLARDEFVIWNLIMCIQ 16
           +++  L  K+N+  +T++R ++ +E  +   ++  ++ +++  +WN +  ++
Sbjct: 169 ELEMELVKKTNQVSETQMRLKRLEEETEKRAKAEMKIVKEKEALWNKVQKLE 220


>At1g03540.1 68414.m00335 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 609

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 1   KIYLKLNTHNQIPNNELVACKSMNGSSSILLSFF 102
           ++Y K++  N I  N +++  + NG     +SFF
Sbjct: 418 RVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFF 451


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,848,374
Number of Sequences: 28952
Number of extensions: 104569
Number of successful extensions: 320
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)