Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H03f
         (431 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   2.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   5.0  
AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    21   5.0  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   6.6  

>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -3

Query: 246 FYSRFFLKVSPCVNLKNFRDIN 181
           FY  +FL V  C+    +R+IN
Sbjct: 156 FYYTYFLCVIVCIFRGKYRNIN 177


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 241 VKIQGESRQVQVGHYDTPEVAGQA 312
           VKI  ++R+V+    D P  AG+A
Sbjct: 161 VKIWFQNRRVKYKKEDLPAAAGKA 184


>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = -3

Query: 312 GLSRHFRSVVMSNLYLSAFALDFYSRFFLKVSPCV 208
           G  +HF  + +SN     F   +Y+  + +  P V
Sbjct: 44  GYVKHFHPLALSNKNAIDFNYYYYAATYARFGPYV 78


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 259 SRQVQVGHYDTPEVAGQAGRTGSFR 333
           SRQ++V H    ++  +   TGS R
Sbjct: 77  SRQLRVSHGCVSKILNRYQETGSIR 101


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,331
Number of Sequences: 336
Number of extensions: 2032
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9565283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)