Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H03f
         (431 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   0.93 
SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   3.8  

>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 186 INNFKQIQTCMAHVLRANTLVSLN*CI*-IGFKTKFCKFNVQLTNII 49
           +  F +IQT +  V+   + + L      +GFK  FC F V LT ++
Sbjct: 489 VQQFAKIQTILLFVIEIISFILLAVFRPFVGFKNSFCVFLVALTRVV 535


>SPCC1259.02c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 822

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 262 CFRLGFLLKIFLESFS 215
           CFRLG L  IF+  FS
Sbjct: 576 CFRLGLLFSIFVVGFS 591


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,780,024
Number of Sequences: 5004
Number of extensions: 34740
Number of successful extensions: 86
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)