Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H03f
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0470 - 4140669-4140728,4142004-4142270,4142526-4144557,414...    30   0.92 
04_04_0512 + 25806599-25808080                                         30   0.92 
01_06_0323 - 28476459-28476915,28477075-28477525,28477623-284779...    29   2.1  
09_03_0206 + 13485420-13486439                                         28   3.7  
04_04_0441 - 25226870-25228327                                         27   4.9  
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732...    27   6.5  
04_04_1356 + 32854585-32854832,32854948-32855148,32855270-328554...    27   8.6  

>08_01_0470 -
           4140669-4140728,4142004-4142270,4142526-4144557,
           4144763-4145550
          Length = 1048

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 58  C*LYIKFAEFRFKTNLNALIQRY*SIGTEHMRHACLNLFEI 180
           C LYI      ++ N N LI ++ + G  H+ H  + LFE+
Sbjct: 411 CILYISIFPEDYEINKNLLIWKWIAEGFVHVEHVGIGLFEV 451


>04_04_0512 + 25806599-25808080
          Length = 493

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = -1

Query: 431 HFIFNLSSIRTLRVSSAMLNP*LFISFIRCYLSRNEPVLPACPATSGVS*CPTC-TCLLS 255
           H I    +   +  SS+ L+  LF+ +I    + + PV   C  TSG++    C  C  +
Sbjct: 166 HGIRTTPNSEAMTTSSSKLDATLFVVWITATFTYSTPVFFQCAVTSGMASLAACFACFAT 225

Query: 254 PWIFTQDFS*KFLLALI*RISGISTISNKFKHAW 153
              F    + K  L      +G + +  +  HAW
Sbjct: 226 MCCFALMQANKVHLWSSRDAAGRNAVMAEVPHAW 259


>01_06_0323 -
           28476459-28476915,28477075-28477525,28477623-28477904,
           28478089-28478118,28480560-28481433
          Length = 697

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 243 KNPRRKQTSTSWTLRHSGSGGTSRQNG 323
           K   +K  S+S  L++SGSGGT R  G
Sbjct: 325 KRKHKKVNSSSKLLKYSGSGGTPRSMG 351


>09_03_0206 + 13485420-13486439
          Length = 339

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 249 PRRKQTSTSWTLRHSGSGGTSR 314
           PRR  T+T+WT R   +GG  R
Sbjct: 44  PRRSTTTTTWTPRREPTGGGPR 65


>04_04_0441 - 25226870-25228327
          Length = 485

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -3

Query: 267 LSAFALDFYSRFFLKVSPCVNLKNFRDINNFKQIQTCMAHVLRAN 133
           L+A   D ++ FF +V PC    +   +N  ++++T    +LRA+
Sbjct: 193 LAATGADPWTAFFRRVIPCCRKTDAVLVNTIQELETSGLDMLRAS 237


>07_03_1578 +
           27872636-27872840,27872928-27873175,27873215-27873295,
           27873665-27873822,27874391-27874450,27874655-27874873,
           27875100-27875201,27875352-27875500,27875582-27875734,
           27875839-27876194
          Length = 576

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +2

Query: 227 KKNLE*KSKAKADKYKLDITTLRKWRDKPAERARSERD 340
           KKN + KSKA+AD  ++D+       DKPA+ A  E D
Sbjct: 468 KKNKKKKSKAEADGEEMDL-------DKPAKVAAEETD 498


>04_04_1356 +
           32854585-32854832,32854948-32855148,32855270-32855447,
           32856389-32856651,32856800-32857040,32857317-32858456,
           32858856-32858993
          Length = 802

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +1

Query: 286 DTPEVAGQAGRTGSFRER*QRMKEIN---SYGFNMADDT 393
           DT E     GR+G+F++    M E N   S  FN  DDT
Sbjct: 417 DTEEACPSIGRSGNFKKYQCAMNEYNDLASLFFNTNDDT 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,992,925
Number of Sequences: 37544
Number of extensions: 210858
Number of successful extensions: 621
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)