Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H03f
         (431 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)                      34   0.043
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.23 
SB_2628| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.31 
SB_16035| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_2237| Best HMM Match : Vicilin_N (HMM E-Value=2.5)                  28   3.8  
SB_58104| Best HMM Match : TPR_1 (HMM E-Value=0)                       27   5.0  
SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)        27   5.0  
SB_20210| Best HMM Match : TPR_1 (HMM E-Value=4.1e-40)                 27   5.0  
SB_11475| Best HMM Match : TPR_1 (HMM E-Value=0)                       27   5.0  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  

>SB_42552| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 945

 Score = 34.3 bits (75), Expect = 0.043
 Identities = 15/29 (51%), Positives = 19/29 (65%)
 Frame = -2

Query: 367 NCLSLSSAVISLGTSPFCRLVPPLPECRN 281
           NC+ LSS V +  +SPFCR+V  LP   N
Sbjct: 88  NCIDLSSKVQADRSSPFCRIVEQLPSTMN 116


>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = -3

Query: 378 VKSITVYLFHPLLSLSERARSAGLSRHFRSVVMSNLYLSAFALDFYSRFFLKVSPCV--- 208
           ++S+  YL    +  S    + G+  +FR  V SN+ L  F   F+S FFL +S CV   
Sbjct: 589 LRSVRFYLVFRGVGSSASPDTTGVV-YFRQDV-SNIDLFVFFSVFFSVFFLVLSICVITW 646

Query: 207 NLKNFRDINNFKQIQ 163
            +K F D     Q+Q
Sbjct: 647 KMKQFHDRRRIAQVQ 661


>SB_2628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 22/57 (38%), Positives = 30/57 (52%)
 Frame = -1

Query: 317 LPACPATSGVS*CPTCTCLLSPWIFTQDFS*KFLLALI*RISGISTISNKFKHAWRM 147
           LPAC     V+ C  C+CLL  W  ++D     LL ++   SG     N+F +AWRM
Sbjct: 177 LPACIFIFIVNLCDECSCLLIHW--SRDL---LLLLVLMNCSG-----NQFLYAWRM 223


>SB_16035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 423 FQSFLDSHFTRIVRHVKSITVYLFHPLLSLSERARSAGLSRHFRSVVMSNLYLSAFALD 247
           +QS + +HF +I   V  I  ++F+P        R +   R FR     N+  SAF+ D
Sbjct: 258 YQSLIPAHFAKISAVVNPIVYWIFNP--------RKSTFIRAFRHSNAKNILSSAFSFD 308


>SB_2237| Best HMM Match : Vicilin_N (HMM E-Value=2.5)
          Length = 127

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
 Frame = +3

Query: 210 RKEKLSRKILSKNPRRKQTSTSWTLRHSGSG----GTSRQNGLVPREITADER---DKQL 368
           RKE++ ++ ++   RRK     W  +  G+     G++R+  +  R +   ER    K+L
Sbjct: 30  RKEEIPKRTMAPTERRKYPKELWLQQKGGNTQNNYGSNRKEEIPKRTMAPTERRKYPKEL 89

Query: 369 WI 374
           W+
Sbjct: 90  WL 91


>SB_58104| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 398

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 307 VPPLPECRNVQLVLVCFRLGFLLK 236
           + PL   + +QLV VC+ + FLL+
Sbjct: 3   ISPLTPAQQIQLVKVCYDIAFLLR 26


>SB_47442| Best HMM Match : Linker_histone (HMM E-Value=1.4e-36)
          Length = 650

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 274 LVLVCFRLGFLLKIFLESFSLR*FKEFQGYQQFQ 173
           ++LV F +GFL  I   +F +  FK    +++FQ
Sbjct: 50  IILVTFSIGFLYSITFHAFFIPSFKVINLFRRFQ 83


>SB_20210| Best HMM Match : TPR_1 (HMM E-Value=4.1e-40)
          Length = 772

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 307 VPPLPECRNVQLVLVCFRLGFLLK 236
           + PL   + +QLV VC+ + FLL+
Sbjct: 40  ISPLTPAQQIQLVKVCYDIAFLLR 63


>SB_11475| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 501

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 307 VPPLPECRNVQLVLVCFRLGFLLK 236
           + PL   + +QL+ VC+ + FLLK
Sbjct: 39  ISPLTPAQQIQLLKVCYDIAFLLK 62


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 186  YP*NSLN*RKEKLSRKILSKNPRRKQTSTSWTLRHSGSG 302
            YP N+LN   E++ R     +PR K  S SW  RH   G
Sbjct: 3033 YPTNTLNGCTERVGRIQYFPSPRAKPFSFSW--RHERPG 3069


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,078,091
Number of Sequences: 59808
Number of extensions: 249155
Number of successful extensions: 631
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 822495283
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)