Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H03f
         (431 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   1.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   1.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   2.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   3.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.4  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   3.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.8  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 300 HFRSVVMSNLYLSAF---ALDFYSRFFLKVSPCVNLK 199
           HF +++M N+Y+  F   ++ +  R  L +S  +NLK
Sbjct: 129 HFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLK 165


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -3

Query: 300 HFRSVVMSNLYLSAF---ALDFYSRFFLKVSPCVNLK 199
           HF +++M N+Y+  F   ++ +  R  L +S  +NLK
Sbjct: 129 HFHNIIMPNVYIRIFPNGSVLYSIRISLTLSCPMNLK 165


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 257 KADKYKLDITTLRKWRDK 310
           + D+   DI  L +WRD+
Sbjct: 299 QVDELNFDIQDLERWRDR 316


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 243 KNPRRKQTSTSWTLRHSGSGGTSRQNGLVPREITADERDKQ 365
           KN RRK T    + +   S GTS        E+T++    Q
Sbjct: 769 KNIRRKVTMGDKSKKQGSSAGTSSITKYTGCELTSESMPLQ 809


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +1

Query: 355 EINSYGFNMADDTRKVRIEERLKI 426
           E+N+ G  +AD T++ +I ++ K+
Sbjct: 166 ELNTQGIALADLTQRAQIGQKHKL 189


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 243 KNPRRKQTSTSWTLRHSGSGGTSRQNGLVPREITADERDKQ 365
           KN RRK T    + +   S GTS        E+T++    Q
Sbjct: 859 KNIRRKVTMGDKSKKQGSSAGTSSITKYTGCELTSESMPLQ 899


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = -1

Query: 335 SRNEPVLPACPATSGVS*CPTCTCLLSPWIFTQDFS*KFLLAL 207
           +R  P   ACP T      P    L       QDFS +F  A+
Sbjct: 204 ARETPNYTACPPTLACPLNPNPQPLTGQQELLQDFSKRFSPAI 246


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 317 LPACPATSGVS 285
           LPA PA SGVS
Sbjct: 241 LPASPADSGVS 251


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
 Frame = -1

Query: 299 TSGVS*CPTCTC----LLSPWIF 243
           T GV+  P CTC     L P+++
Sbjct: 306 TPGVTMIPACTCKAVACLDPYVY 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,145
Number of Sequences: 438
Number of extensions: 2306
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)