Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H03f
         (431 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11230.1 68414.m01286 hypothetical protein contains similarit...    28   3.1  
At5g20450.1 68418.m02431 expressed protein weak similarity to my...    27   4.1  
At3g49480.1 68416.m05408 hypothetical protein several hypothetic...    27   5.5  
At3g09030.1 68416.m01059 potassium channel tetramerisation domai...    27   5.5  
At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 famil...    27   5.5  
At5g28610.1 68418.m03492 expressed protein                             26   9.6  

>At1g11230.1 68414.m01286 hypothetical protein contains similarity
           to cotton fiber expressed protein 1 [Gossypium hirsutum]
           gi|3264828|gb|AAC33276
          Length = 301

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +1

Query: 205 INARRNFQEKS*VKIQGESRQVQVGHYDTPEVAGQAGRTGSFRER*QRMKEINSY 369
           +N +R+ + K+ +  +G SR +   HY  P++ G  G  G    + +  +++ +Y
Sbjct: 198 VNPKRDNKWKT-ISEEGTSRPLSTSHYQRPDIFG-LGAGGDSLRKSETFRDVTNY 250


>At5g20450.1 68418.m02431 expressed protein weak similarity to
           myosin [Arabidopsis thaliana] GI:433663
          Length = 341

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 404 RTLRVSSAMLNP*LFISFIRCYLSRNEPVLPACPA 300
           RT R S+ + +  L    +  YL R   V+P CPA
Sbjct: 233 RTFRSSTMLSSKGLMSGVLVSYLDRQSQVVPKCPA 267


>At3g49480.1 68416.m05408 hypothetical protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 309

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 300 HFRSVVMSNLYLSA-FALDFYSRFFLKVSPCVNLKNFRD-INNFKQIQTCMAHVLRANTL 127
           H  +VV   L+ S  F     S  +L +SP   +  + D +NN+ ++  CM H+   + L
Sbjct: 133 HLVTVVTDELFPSEKFMRPLSSVKYLALSPFDTMVPWCDAVNNYSRLVECMIHLSEYDLL 192

Query: 126 VSL 118
            SL
Sbjct: 193 ESL 195


>At3g09030.1 68416.m01059 potassium channel tetramerisation
           domain-containing protein contains Pfam profile PF02214:
           K+ channel tetramerisation domain
          Length = 460

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 327 VPREITADERDKQLWI*HGGR 389
           VP  +TA   D  LWI HGG+
Sbjct: 123 VPSALTATAGDASLWIAHGGQ 143


>At2g03820.1 68415.m00343 nonsense-mediated mRNA decay NMD3 family
           protein contains Pfam profile: PF04981 NMD3 family
          Length = 516

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -1

Query: 281 CPTCTCLLSP---WIFTQDFS*KFLLALI*RISGISTISNK 168
           CP CTC L P   WI  Q  S + L   I R+  ++ +  K
Sbjct: 59  CPECTCYLQPPKTWIKCQWESKELLTFCIKRLKNLNKVKLK 99


>At5g28610.1 68418.m03492 expressed protein
          Length = 123

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 285 RHSGSGGTSRQNGLVPREITADERDKQ 365
           RH GSGG   Q G    E   +E +++
Sbjct: 70  RHHGSGGQEEQEGAAEEEEVEEEEEEE 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,097,002
Number of Sequences: 28952
Number of extensions: 176475
Number of successful extensions: 472
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)