Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...   124   8e-30
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    65   7e-12
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    63   2e-11
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    58   6e-10
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    56   2e-09
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    40   2e-04
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    30   0.24 
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    29   0.56 
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   1.7  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   6.8  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   9.0  
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    25   9.0  

>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score =  124 bits (299), Expect = 8e-30
 Identities = 58/116 (50%), Positives = 75/116 (64%)
 Frame = +3

Query: 150 CLEQVADLIEKYKKKGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEV 329
           C++QV  ++  +     PV   ++EPIQSEGGDN ASP+FF  LQ   K+  V FIVDEV
Sbjct: 248 CIDQVEQILTNHHC---PVVACIIEPIQSEGGDNHASPDFFHKLQATLKKHDVKFIVDEV 304

Query: 330 QTGCGPTGKMWCYEHFDLPTSPDVVTFSKKMLTGGFYFTADFKPPHAYRVFNTWDG 497
           QTG G TG +W +E ++LP  PD+VTFSKK    G ++      PHAY+ FNTW G
Sbjct: 305 QTGVGSTGTLWAHEQWNLPYPPDMVTFSKKFQAAGIFYHDLALRPHAYQHFNTWMG 360


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 64.9 bits (151), Expect = 7e-12
 Identities = 37/82 (45%), Positives = 44/82 (53%)
 Frame = +3

Query: 195 GNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGCGPTGKMWCYEH 374
           G  VA  +VEPIQ E G       +  +  KL K   V FI DEVQTG   TGKM C EH
Sbjct: 204 GPKVAAFLVEPIQGEAGVMVPDDGYLEEAYKLCKAHNVLFIADEVQTGVARTGKMLCIEH 263

Query: 375 FDLPTSPDVVTFSKKMLTGGFY 440
            ++   PDVV    K ++GG Y
Sbjct: 264 SNV--KPDVVILG-KAISGGVY 282


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 28/75 (37%), Positives = 42/75 (56%)
 Frame = +3

Query: 207 AGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGCGPTGKMWCYEHFDLP 386
           A ++VEP+Q EGG   A PEF   L+K   +   + I DE+Q G G +G +W +      
Sbjct: 225 AAVIVEPVQGEGGICPAKPEFLIALRKACDKVGASLIYDEIQCGLGRSGDLWAHSIVKDV 284

Query: 387 TSPDVVTFSKKMLTG 431
            SPD++T +K +  G
Sbjct: 285 ASPDIITVAKPLANG 299


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 58.4 bits (135), Expect = 6e-10
 Identities = 30/82 (36%), Positives = 47/82 (57%)
 Frame = +3

Query: 186 KKKGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGCGPTGKMWC 365
           K+    +A ++VE I S GG  E    + + L+K  +E+ +  I+DE QTG G TG M+ 
Sbjct: 206 KQSTGSLACMIVETILSTGGIIELPQGYLKALKKKCEERGMLLIIDEAQTGIGRTGSMFS 265

Query: 366 YEHFDLPTSPDVVTFSKKMLTG 431
           +EH  +   PD++T SK +  G
Sbjct: 266 FEHHGI--VPDILTLSKSLGAG 285


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 56.4 bits (130), Expect = 2e-09
 Identities = 26/67 (38%), Positives = 39/67 (58%)
 Frame = +3

Query: 216 VVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGCGPTGKMWCYEHFDLPTSP 395
           +VEPIQ EGG     P +    ++L  +     ++DE+QTGCG TGK W  E+ ++   P
Sbjct: 241 IVEPIQGEGGVIVPPPGYLAKARELCTKYDTYLVLDEIQTGCGRTGKFWACEYENI--IP 298

Query: 396 DVVTFSK 416
           D + F+K
Sbjct: 299 DCIAFAK 305


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +3

Query: 204 VAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTG-CGPTGKMWCYEHFD 380
           +A ++VE +Q  GG   A  EF + +Q   ++  + FI+DEV T    P G    Y    
Sbjct: 204 IAAVIVEAMQGAGGAIPADKEFMQTIQLECEKNDIVFILDEVMTSRLSPGGLQQIY---- 259

Query: 381 LPTSPDVVTFSKKMLTGGFYFTA 449
               PD+ T   K L GG  F A
Sbjct: 260 -CLKPDLTTLG-KYLGGGLPFGA 280


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 251 IITSFGLNWFHNNASNRIALFFILL 177
           I+ S+G ++F NN SN +  FF+L+
Sbjct: 458 ILLSYGSDYFTNNGSNPVMYFFLLM 482


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +3

Query: 264 EFFRDLQKLSKEKAVAFIVDEVQTGCGPTGKMWCYEHFDLPTSPDVVTFSKK 419
           E  R      +E  +   +   Q+GCG TG      HF+    P VVT +++
Sbjct: 24  ECVRCFNSQDEEGGIDLCLTCFQSGCGETGLKHSLVHFEQTLHPIVVTIARQ 75


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -2

Query: 460 GLKSAVK*NPPVNIFLLKVTTSGDVGRSKCS*HHIFPVGPHPVCTSSTINATAFSLDN 287
           G +SAV     VN  + +V      G   C    +  V P P+ +SST N+T  S  N
Sbjct: 128 GTESAVACPSLVNNQVYQVFFGVGNGNPSCVGIAVLAVLPQPISSSSTYNSTTSSYHN 185


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = +3

Query: 339 CGPTGKMWCY---EHFDLPTSPDVVTFSKKMLTGG--FYFTADFKPPHAYRVFNTW 491
           CG  G +W +       LP +  +   +  M T G  +++TA   PP  YR F +W
Sbjct: 76  CGAGGMVWSWFVGATCLLPIAFALSELASSMPTSGSLYFWTAYLSPPK-YRAFLSW 130


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 366 YEHFDLPTS-PDVVTFSKKMLTGGFYFTADFKPPHAYRVFNT 488
           Y   D+P   P+ V   ++ L G F F A +   H YR F T
Sbjct: 486 YADTDVPDRIPEFVLQRRRWLNGSF-FAAAYAICHYYRFFRT 526


>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 159 QVADLIEKYKKKGNPVAGIVVEPIQS 236
           Q+ D + KYK++G P +  + E I +
Sbjct: 208 QLEDAVLKYKRRGGPTSPKIYESISN 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,144,318
Number of Sequences: 5004
Number of extensions: 41767
Number of successful extensions: 139
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)