Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475           65   3e-11
07_03_0274 - 16155728-16156180,16156542-16156958,16157044-16157520     64   5e-11
03_05_0467 - 24615243-24615384,24619166-24619450,24619516-246195...    48   6e-06
02_01_0095 - 679597-679671,679775-679890,682241-682319,682446-68...    46   2e-05
04_04_1143 + 31202901-31203034,31203312-31203345,31203913-312039...    45   3e-05
03_01_0509 + 3836284-3836547,3836927-3837157,3837253-3837423,383...    43   1e-04
08_01_0699 - 6163662-6163680,6163865-6163943,6163979-6164048,616...    42   2e-04
03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288...    38   0.005
08_02_1375 - 26524373-26525440,26525566-26525739,26526557-26526751     37   0.011
01_01_0963 - 7577207-7577992,7578506-7578622,7578711-7578921,757...    29   2.3  
10_02_0062 - 4814139-4814176,4814571-4815627                           29   3.0  
06_01_0350 + 2534422-2535615                                           28   4.0  
06_01_0620 + 4508722-4508875,4509566-4509830,4510092-4510230           27   6.9  
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921...    27   9.1  

>05_01_0220 + 1644608-1645036,1645147-1645578,1645939-1646475
          Length = 465

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
 Frame = +3

Query: 174 IEKYKK--KGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGCGP 347
           +E+ KK  +   +A + VEP+Q EGG + A+ EF + L+    E     + DEVQ G G 
Sbjct: 235 LEEAKKVIQSGKIAAVFVEPVQGEGGIHSATKEFLQGLRDACDEAGALLVFDEVQCGLGR 294

Query: 348 TGKMWCYEHFDLPTSPDVVTFSKKMLTG 431
           TG +W YE + +   PD++T +K +  G
Sbjct: 295 TGYLWAYEAYGV--LPDIMTLAKPLAGG 320


>07_03_0274 - 16155728-16156180,16156542-16156958,16157044-16157520
          Length = 448

 Score = 64.5 bits (150), Expect = 5e-11
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
 Frame = +3

Query: 174 IEKYKK--KGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGCGP 347
           +E+ KK  +   +A + VEP+Q EGG + A+ EF + L+    E     + DEVQ G G 
Sbjct: 246 LEEAKKVIQSGKIAAVFVEPMQGEGGIHSATKEFLQGLRDACDEAGALLVFDEVQCGLGR 305

Query: 348 TGKMWCYEHFDLPTSPDVVTFSKKMLTG 431
           TG +W YE + +   PD++T +K +  G
Sbjct: 306 TGYLWAYEAYGV--VPDIMTLAKPLAGG 331


>03_05_0467 -
           24615243-24615384,24619166-24619450,24619516-24619596,
           24619807-24619904,24620038-24620190,24620705-24620760,
           24620844-24621003,24621416-24621646,24621795-24621903,
           24622642-24622799
          Length = 490

 Score = 47.6 bits (108), Expect = 6e-06
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = +3

Query: 168 DLIEK-YKKKGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGCG 344
           D +EK +K  G  + G + EPIQ E G       + + ++ L     +  I DE+QTG  
Sbjct: 212 DGLEKIFKDHGERICGFLFEPIQGEAGVIIPPDGYLKAVRDLCSRHNILMIADEIQTGIA 271

Query: 345 PTGKMWCYEHFDLPTSPDVVTFSKKMLTG 431
            TGKM   +  ++   PDVV   K +  G
Sbjct: 272 RTGKMLACDWENI--RPDVVILGKALGAG 298


>02_01_0095 -
           679597-679671,679775-679890,682241-682319,682446-682539,
           682638-682716,682846-682933,683023-683106,683351-683398,
           684044-684118,684274-684315,684347-684416,684551-684589,
           685118-685191,686936-687028,687203-687300,688170-688236
          Length = 406

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 24/76 (31%), Positives = 41/76 (53%)
 Frame = +3

Query: 195 GNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGCGPTGKMWCYEH 374
           G  +A  + EP+   GG       +F  +Q + K+  + FIVDEV TG G  G M+  + 
Sbjct: 159 GRQIAAFIAEPVIGAGGVILPPKTYFEKIQAVVKKYDILFIVDEVITGFGRLGTMFGSDL 218

Query: 375 FDLPTSPDVVTFSKKM 422
           +++   PD+V+ +K +
Sbjct: 219 YNI--KPDLVSLAKAL 232


>04_04_1143 +
           31202901-31203034,31203312-31203345,31203913-31203985,
           31204090-31204187,31204356-31204448,31205081-31205154,
           31205680-31205768,31205859-31205935,31206016-31206090,
           31206438-31206485,31206571-31206654,31206734-31206821,
           31206896-31206974,31207072-31207162,31207724-31207802,
           31208219-31208334,31208430-31208488,31210292-31210342,
           31211418-31211444,31211725-31211809,31211952-31212024,
           31212154-31212251,31212385-31212477,31212972-31213045,
           31213258-31213296,31213410-31213498,31213583-31213707,
           31213750-31213824,31214225-31214272,31214359-31214442,
           31214574-31214661,31214762-31214840,31214930-31215020,
           31215113-31215191,31215485-31215600,31215910-31215987
          Length = 960

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
 Frame = +3

Query: 159 QVADLIEKYKKKGNP--VAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQ 332
           ++AD +E    K  P  VA  + EP+   GG       +F  +Q + ++  V FI DEV 
Sbjct: 208 RLADNLENLILKEGPETVAAFIAEPVIGAGGVIPPPKTYFEKIQAVLQKYDVLFIADEVI 267

Query: 333 TGCGPTGKMWCYEHFDLPTSPDVVTFSKKM 422
           TG G  G M+  + +++   PD+V+ +K +
Sbjct: 268 TGFGRLGTMFGSDLYNI--KPDLVSLAKAL 295



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 23/80 (28%), Positives = 41/80 (51%)
 Frame = +3

Query: 183 YKKKGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGCGPTGKMW 362
           Y  K + +A  + EP+   GG       +F  +Q + K+  + FI DEV T  G  G M+
Sbjct: 709 YCAKRSKIAAFIAEPVMGAGGVIPPPKTYFEKVQAIVKKYDILFIADEVITAFGRLGTMF 768

Query: 363 CYEHFDLPTSPDVVTFSKKM 422
             + +++   PD+V+ +K +
Sbjct: 769 GSDMYNI--KPDLVSMAKAL 786


>03_01_0509 +
           3836284-3836547,3836927-3837157,3837253-3837423,
           3838379-3838522,3838640-3838819,3838926-3839151,
           3839326-3839439,3839541-3839627,3839711-3839754
          Length = 486

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +3

Query: 204 VAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGCGPTGK-MWCYEHFD 380
           VAG + E  Q  GG  E +P + +      ++     I DEVQ+G G TG   W ++  D
Sbjct: 261 VAGFIAETFQGVGGAVELAPGYLKLAYDTVRKAGGVCIADEVQSGFGRTGSHYWGFQTQD 320

Query: 381 LPTSPDVVTFSKKMLTG 431
           +   PD+VT +K +  G
Sbjct: 321 V--IPDIVTMAKGIGNG 335


>08_01_0699 -
           6163662-6163680,6163865-6163943,6163979-6164048,
           6164151-6164266,6164656-6164734,6164831-6164921,
           6165006-6165084,6165161-6165248,6165371-6165454,
           6165544-6165591,6166118-6166192,6166286-6166362,
           6166460-6166548,6166711-6166749,6167133-6167206,
           6167496-6167588,6167820-6167917,6168100-6168172,
           6168322-6168406,6168513-6168634,6169307-6169414,
           6169537-6169608
          Length = 585

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 22/79 (27%), Positives = 39/79 (49%)
 Frame = +3

Query: 186 KKKGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGCGPTGKMWC 365
           K+    +A  + EP+   GG       +F  +Q + K+  +  I DEV T  G  G M+ 
Sbjct: 305 KEGPETIAAFIAEPVMGAGGVIPPPKTYFEKIQAVLKKYDILLIADEVITAFGRLGTMFG 364

Query: 366 YEHFDLPTSPDVVTFSKKM 422
            + +D+   PD+V+ +K +
Sbjct: 365 CDMYDI--KPDLVSIAKAL 381


>03_02_0936 -
           12528336-12528379,12528516-12528602,12528696-12528809,
           12528895-12529120,12529200-12529523,12529603-12529773,
           12529870-12530100,12530291-12530479,12531176-12531178
          Length = 462

 Score = 37.9 bits (84), Expect = 0.005
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +3

Query: 204 VAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGCGPTGK-MWCYEHFD 380
           VAG + E IQ  GG  E SP +     +  +      I DEVQ G    G   W +E   
Sbjct: 237 VAGFISEAIQGVGGIVELSPGYLPLAYEAVRSAGGLCIADEVQAGFARVGSHFWGFETHG 296

Query: 381 LPTSPDVVTFSKKMLTG 431
           +   PD+VT +K +  G
Sbjct: 297 V--VPDIVTMAKGIGNG 311


>08_02_1375 - 26524373-26525440,26525566-26525739,26526557-26526751
          Length = 478

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 28/94 (29%), Positives = 44/94 (46%)
 Frame = +3

Query: 153 LEQVADLIEKYKKKGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQ 332
           +E V  L E+ K +   +A + +EP+    G     P F   L+ L+K+     + DEV 
Sbjct: 237 VEAVKKLFEENKGQ---IAAVFLEPVVGNAGFIPPQPGFLNALRDLTKQDGALLVFDEVM 293

Query: 333 TGCGPTGKMWCYEHFDLPTSPDVVTFSKKMLTGG 434
           TG          E+F +  +PDV T   K++ GG
Sbjct: 294 TGF-RLAYGGAQEYFGI--TPDVSTLG-KIIGGG 323


>01_01_0963 -
           7577207-7577992,7578506-7578622,7578711-7578921,
           7579406-7579442,7580781-7580902,7581292-7581500
          Length = 493

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = +3

Query: 153 LEQVADL--IEKYKKKGNPVA--GIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIV 320
           ++++ DL  +++Y+++       G  + PI       +A  +F R  +   KE   A IV
Sbjct: 134 MDKLPDLSYMDRYQRRNKEYISLGCDILPILKGRSPMQAYSDFMRSFRDAFKEYLGA-IV 192

Query: 321 DEVQTGCGPTGKM 359
            EVQ G GP G++
Sbjct: 193 TEVQIGMGPGGEL 205


>10_02_0062 - 4814139-4814176,4814571-4815627
          Length = 364

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 205 TGLPFFLYFSIRSATCSRHQKQPSGRQSSII 113
           TG+P  L F+IR+ +C +  + P G+  + +
Sbjct: 288 TGVPLVLDFAIRNGSCPQENRGPPGKDYACV 318


>06_01_0350 + 2534422-2535615
          Length = 397

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 515 SIXLDPPIPRVENSVRVRRFKISSEVESSSQH 420
           ++ L P +PR  +  R RRF +   V+ SS+H
Sbjct: 274 NLNLPPMLPRDSSIKRTRRFDVFEAVDLSSEH 305


>06_01_0620 + 4508722-4508875,4509566-4509830,4510092-4510230
          Length = 185

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 343 PHPVCTSSTINATAFSLDN 287
           PHP   S T++AT+F  DN
Sbjct: 40  PHPAAVSLTLSATSFGSDN 58


>12_02_0792 -
           23191120-23191313,23191419-23191775,23192027-23192108,
           23192186-23193097,23193190-23193346,23193540-23193694,
           23194667-23194819,23195334-23195627,23195711-23195896,
           23196062-23196662,23196868-23196992,23197101-23197197,
           23197299-23197411,23198129-23198233
          Length = 1176

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +3

Query: 156 EQVADLIEKYKKKGNPVAGIV 218
           + +A +I++ KK GNPVAG++
Sbjct: 455 DALARMIKEEKKAGNPVAGLI 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,089,908
Number of Sequences: 37544
Number of extensions: 277040
Number of successful extensions: 772
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)