Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12821| Best HMM Match : Aminotran_3 (HMM E-Value=4.3e-10)           38   0.004
SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14)              28   4.1  
SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)                      27   7.1  
SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)               27   9.4  
SB_47887| Best HMM Match : PAN (HMM E-Value=4.1e-07)                   27   9.4  

>SB_12821| Best HMM Match : Aminotran_3 (HMM E-Value=4.3e-10)
          Length = 252

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +3

Query: 198 NPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGCGPTGK-MWCYEH 374
           N   G + E +Q  GG       F ++  K  +      I DEVQ G G  G   W +E 
Sbjct: 95  NVTHGFICESMQGCGGQIVYPQNFMKEAFKHVRAAGGVCIADEVQVGFGRVGNHFWAFET 154

Query: 375 FDLPTSPDVVTFSKKMLTG 431
            D+   PD+VT  K +  G
Sbjct: 155 QDV--VPDIVTLGKPIGNG 171


>SB_50620| Best HMM Match : Lectin_C (HMM E-Value=2.1e-14)
          Length = 620

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/25 (48%), Positives = 20/25 (80%)
 Frame = -1

Query: 248 ITSFGLNWFHNNASNRIALFFILLN 174
           ITSFGL++F  + S+ I++F+I L+
Sbjct: 49  ITSFGLDYFTQSLSSHISMFWIGLS 73


>SB_24591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +3

Query: 156 EQVADLIEKYKKKGNPVAGIVVEPIQSEGGDNEASP 263
           EQ+ DL+      G  VAG + EPIQ   GD  A+P
Sbjct: 158 EQLEDLL--IHSAGKKVAGFIAEPIQG-SGDRIANP 190


>SB_11994| Best HMM Match : ERM (HMM E-Value=0.28)
          Length = 465

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +3

Query: 177 EKYKKKGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGCGPT-G 353
           E+Y KKG PV    V   +  GG N+A+   F +L +L  E+   FI    QT  G T  
Sbjct: 53  EEYYKKGIPVTPFCVTHKRVLGGGNQAARTPFVELPEL-VERPHPFINWGAQTLQGLTQA 111

Query: 354 KMWCYEHFDLPTSPDVVTFSKKML 425
           ++  +E  +   S D  + S  ++
Sbjct: 112 ELQSFEILNESASDDSGSESSSLI 135


>SB_34181| Best HMM Match : Extensin_2 (HMM E-Value=0.57)
          Length = 1121

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 499  PPSHVLKTLYACGGLKSAVK*NPPVNIFLLKVTTSGDVGRSKCS*HHI 356
            PPS  L+ LY  G + + +     V IF + V  SG+ G      HH+
Sbjct: 1049 PPSTGLRVLYNPGPVAAGMSAKLDVEIFAVAVGVSGESGVGHVG-HHV 1095


>SB_47887| Best HMM Match : PAN (HMM E-Value=4.1e-07)
          Length = 494

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 342 GPTGKMWCYEHFDLPTSPDVVTFSKKM 422
           G T +M+C++ +D   SPD V  ++ M
Sbjct: 36  GITARMYCFQLYDQALSPDQVNAARDM 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,976,329
Number of Sequences: 59808
Number of extensions: 310716
Number of successful extensions: 723
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)