Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306H02f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80600.1 68414.m09457 acetylornithine aminotransferase, mitoc... 65 3e-11
At5g46180.1 68418.m05680 ornithine aminotransferase, putative / ... 52 2e-07
At4g39660.1 68417.m05608 alanine--glyoxylate aminotransferase, p... 52 3e-07
At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase, p... 52 3e-07
At5g63570.1 68418.m07979 glutamate-1-semialdehyde 2,1-aminomutas... 43 1e-04
At3g48730.1 68416.m05321 glutamate-1-semialdehyde 2,1-aminomutas... 41 4e-04
At3g22200.1 68416.m02801 4-aminobutyrate aminotransferase / gamm... 41 6e-04
At3g08860.1 68416.m01030 alanine--glyoxylate aminotransferase, p... 40 8e-04
At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containi... 30 0.82
At1g03380.1 68414.m00317 expressed protein 28 4.4
At1g01560.1 68414.m00073 mitogen-activated protein kinase, putat... 27 5.8
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 27 7.7
At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo... 27 7.7
At5g01240.2 68418.m00032 amino acid permease, putative strong si... 27 7.7
At5g01240.1 68418.m00031 amino acid permease, putative strong si... 27 7.7
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 27 7.7
>At1g80600.1 68414.m09457 acetylornithine aminotransferase,
mitochondrial, putative / acetylornithine transaminase,
putative / AOTA, putative / ACOAT, putative similar to
SP|O04866 Acetylornithine aminotransferase,
mitochondrial precursor (EC 2.6.1.11) (ACOAT)
(Acetylornithine transaminase) (AOTA) {Alnus glutinosa};
contains Pfam profile PF00202: aminotransferase, class
III
Length = 457
Score = 64.9 bits (151), Expect = 3e-11
Identities = 37/103 (35%), Positives = 49/103 (47%)
Frame = +3
Query: 192 KGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGCGPTGKMWCYE 371
+ +A + VEPIQ EGG A+ EF + L+ + DEVQ G G TG MW YE
Sbjct: 239 RSGKIAAVFVEPIQGEGGIYSATKEFLQSLRSACDAAGSLLVFDEVQCGLGRTGLMWAYE 298
Query: 372 HFDLPTSPDVVTFSKKMLTGGFYFTADFKPPHAYRVFNTWDGG 500
F + +PD++T +K L GG A N D G
Sbjct: 299 AFGV--TPDIMTVAKP-LAGGLPIGAVLVTEKVAETINYGDHG 338
>At5g46180.1 68418.m05680 ornithine aminotransferase, putative /
ornithine--oxo-acid aminotransferase, putative similar
to SP|Q92413 Ornithine aminotransferase (EC 2.6.1.13)
(Ornithine--oxo-acid aminotransferase) [Aspergillus
nidulans] {Emericella nidulans}; contains Pfam profile
PF00202: aminotransferase, class III
Length = 475
Score = 52.0 bits (119), Expect = 2e-07
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Frame = +3
Query: 165 ADLIEK-YKKKGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGC 341
AD +EK +K+KG+ +AG + EPIQ E G + + +++L + V I DEVQ+G
Sbjct: 212 ADSLEKIFKEKGDRIAGFLFEPIQGEAGVIIPPDGYLKAVRELCTKYNVLMIADEVQSGL 271
Query: 342 GPTGKMWCYEHFDLPTSPDVVTFSKKMLTGG 434
+GKM + ++ PD+V K L GG
Sbjct: 272 ARSGKMLACDWEEI--RPDMVILG-KALGGG 299
>At4g39660.1 68417.m05608 alanine--glyoxylate aminotransferase,
putative / beta-alanine-pyruvate aminotransferase,
putative / AGT, putative similar to SP|Q64565
Alanine--glyoxylate aminotransferase 2, mitochondrial
precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
aminotransferase) {Rattus norvegicus}; contains Pfam
profile PF00202: aminotransferase, class III
Length = 476
Score = 51.6 bits (118), Expect = 3e-07
Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +3
Query: 156 EQVADLIEKYKKKGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQT 335
+ V D IE Y G VAG + E IQ GG E +P + + + ++ + I DEVQT
Sbjct: 237 KDVHDHIE-YGTSGK-VAGFIAETIQGVGGAVELAPGYLKSVYEIVRNAGGVCIADEVQT 294
Query: 336 GCGPTGK-MWCYEHFDLPTSPDVVTFSKKMLTG 431
G G TG W ++ D+ PD+VT +K + G
Sbjct: 295 GFGRTGSHYWGFQTQDV--VPDIVTMAKGIGNG 325
>At2g38400.1 68415.m04717 alanine--glyoxylate aminotransferase,
putative / beta-alanine-pyruvate aminotransferase,
putative / AGT, putative similar to SP|Q64565
Alanine--glyoxylate aminotransferase 2, mitochondrial
precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
aminotransferase) {Rattus norvegicus}; contains Pfam
profile PF00202: aminotransferase, class III
Length = 477
Score = 51.6 bits (118), Expect = 3e-07
Identities = 32/92 (34%), Positives = 48/92 (52%)
Frame = +3
Query: 156 EQVADLIEKYKKKGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQT 335
+ + DLI+ Y G+ +AG + E IQ GG E +P + K+ FI DEVQ+
Sbjct: 239 KDLQDLIQ-YGTTGH-IAGFICEAIQGVGGIVELAPGYLSAAYDTVKKAGGLFIADEVQS 296
Query: 336 GCGPTGKMWCYEHFDLPTSPDVVTFSKKMLTG 431
G TG W +E ++ PD+VT +K + G
Sbjct: 297 GFARTGNFWGFEAHNV--VPDIVTMAKGIGNG 326
>At5g63570.1 68418.m07979 glutamate-1-semialdehyde 2,1-aminomutase 1
(GSA 1) / glutamate-1-semialdehyde aminotransferase 1
(GSA-AT 1) identical to GSA 1 [SP|P42799]
Length = 474
Score = 43.2 bits (97), Expect = 1e-04
Identities = 29/94 (30%), Positives = 48/94 (51%)
Frame = +3
Query: 153 LEQVADLIEKYKKKGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQ 332
LE V L +K + ++ +++EP+ G +PEF L++L+K+ V I DEV
Sbjct: 233 LEAVEKLFAAHKGE---ISAVILEPVVGNSGFIPPTPEFINGLRQLTKDNGVLLIFDEVM 289
Query: 333 TGCGPTGKMWCYEHFDLPTSPDVVTFSKKMLTGG 434
TG E+F + +PD+ T K++ GG
Sbjct: 290 TGF-RLAYGGAQEYFGI--TPDLTTLG-KIIGGG 319
>At3g48730.1 68416.m05321 glutamate-1-semialdehyde 2,1-aminomutase 2
(GSA 2) / glutamate-1-semialdehyde aminotransferase 2
(GSA-AT 2) identical to GSA2 [SP|Q42522]
Length = 472
Score = 41.1 bits (92), Expect = 4e-04
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +3
Query: 174 IEK-YKKKGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGCGPT 350
+EK ++ +A I++EP+ G PEF +++++K+ I DEV TG
Sbjct: 234 VEKLFEANKGEIAAIILEPVVGNSGFITPKPEFIEGIRRITKDNGALLIFDEVMTGF-RL 292
Query: 351 GKMWCYEHFDLPTSPDVVTFSKKMLTGG 434
E+F + +PD+ T K++ GG
Sbjct: 293 AYGGAQEYFGI--TPDLTTLG-KIIGGG 317
>At3g22200.1 68416.m02801 4-aminobutyrate aminotransferase /
gamma-amino-N-butyrate transaminase / GABA transaminase
/ beta-alanine--oxoglutarate aminotransferase identical
to gamma-aminobutyrate transaminase subunit precursor
[Arabidopsis thaliana] (EC 2.6.1.19) GI:14030435;
contains Pfam profile PF00202: aminotransferase, class
III; identical to cDNA gamma-aminobutyrate transaminase
subunit precursor, nuclear gene for mitochondrial
product GI:14030434
Length = 504
Score = 40.7 bits (91), Expect = 6e-04
Identities = 24/89 (26%), Positives = 43/89 (48%)
Frame = +3
Query: 156 EQVADLIEKYKKKGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQT 335
+ + DLI K+ + + EP+ GG +F +Q + K+ + FI DEV
Sbjct: 245 KNLEDLI--IKEGPETIGAFIAEPVMGAGGVIPPPATYFEKVQAVVKKYDILFIADEVIC 302
Query: 336 GCGPTGKMWCYEHFDLPTSPDVVTFSKKM 422
G G M+ + +++ PD+VT +K +
Sbjct: 303 AFGRLGTMFGCDKYNI--KPDLVTLAKAL 329
>At3g08860.1 68416.m01030 alanine--glyoxylate aminotransferase,
putative / beta-alanine-pyruvate aminotransferase,
putative / AGT, putative similar to similar to SP|Q64565
Alanine--glyoxylate aminotransferase 2, mitochondrial
precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
aminotransferase) {Rattus norvegicus}; contains Pfam
profile PF00202: aminotransferase, class III
Length = 481
Score = 40.3 bits (90), Expect = 8e-04
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Frame = +3
Query: 162 VADLIEKYKKKGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSKEKAVAFIVDEVQTGC 341
V DLI+ + G VAG + E IQ GG E +P + + ++ I DEVQ+G
Sbjct: 244 VHDLIQ-FGTSGQ-VAGFIGESIQGVGGIVELAPGYLPAAYDIVRKAGGVCIADEVQSGF 301
Query: 342 GPTG-KMWCYEHFDLPTSPDVVTFSKKMLTG 431
TG W ++ + PD+VT +K + G
Sbjct: 302 ARTGTHFWGFQSHGV--IPDIVTMAKGIGNG 330
>At5g66520.1 68418.m08387 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 620
Score = 30.3 bits (65), Expect = 0.82
Identities = 22/99 (22%), Positives = 44/99 (44%)
Frame = +3
Query: 117 IELCLPLGCF*CLEQVADLIEKYKKKGNPVAGIVVEPIQSEGGDNEASPEFFRDLQKLSK 296
+ C LG + + + K + + + V G V+ + ++ G+ E + E F++++K S
Sbjct: 254 LSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSV 313
Query: 297 EKAVAFIVDEVQTGCGPTGKMWCYEHFDLPTSPDVVTFS 413
+ A I G G E + P+V+TF+
Sbjct: 314 QAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFT 352
>At1g03380.1 68414.m00317 expressed protein
Length = 926
Score = 27.9 bits (59), Expect = 4.4
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 153 LEQVADLIEKYKKKGNPVAGIVVEPIQSEGGDNE 254
+E ++ E K+G PV+ + ++P+ + GD+E
Sbjct: 91 VEDASNFNELVSKRGGPVSFLQMQPLPARSGDHE 124
>At1g01560.1 68414.m00073 mitogen-activated protein kinase, putative
/ MAPK, putative (MPK11) similar to MAP kinase 5
GI:4239889 from [Zea mays]; mitogen-activated protein
kinase (MAPK)(AtMPK11), PMID:12119167
Length = 275
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 145 FDVLSKWLT*LRSIKKRAIRLLALLWNQFSPKEVIMKLHRNSF 273
F+V K++ LR I + A ++ WN + +EV +K N+F
Sbjct: 33 FEVSKKYVPPLRPIGRGASGIVCAAWNSETGEEVAIKKIGNAF 75
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +3
Query: 156 EQVADLIEKYKKKGNPVAGIV 218
+ +A ++++ KK GNPVAG++
Sbjct: 416 DDLARMVKEEKKLGNPVAGVI 436
>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase familiy protein
similar to SP|O14072 Cation-transporting ATPase 4 (EC
3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
accession IPR001757: ATPase, E1-E2 type; contains Pfam
profile PF00702: haloacid dehalogenase-like hydrolase
Length = 1179
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 55 LSDFWSYSIFDLFFMAPFKKLLS 123
L +FW YS+F LF + F+ ++
Sbjct: 215 LDEFWYYSVFTLFMLFMFESTMA 237
>At5g01240.2 68418.m00032 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 408
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 8 LITLPLVSRVYTVKTHFPIFGPIVSSTYSL 97
L+ LP+V ++ + FP FGPI S+ +L
Sbjct: 280 LVRLPVVVPIWFLAIIFPFFGPINSAVGAL 309
>At5g01240.1 68418.m00031 amino acid permease, putative strong
similarity to AUX1 GI:1531758 from [Arabidopsis
thaliana]; contains Pfam profile PF01490: Transmembrane
amino acid transporter protein
Length = 488
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 8 LITLPLVSRVYTVKTHFPIFGPIVSSTYSL 97
L+ LP+V ++ + FP FGPI S+ +L
Sbjct: 360 LVRLPVVVPIWFLAIIFPFFGPINSAVGAL 389
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein helicase,
putative
Length = 2172
Score = 27.1 bits (57), Expect = 7.7
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +1
Query: 136 WAAFDVLSKWLT*LRSIKKRAIRLLALLWNQFS--PKEVIMKLHRNSFETFKNYXXXXXX 309
WA K L + + KR + LW QF PKE++MKL +N ++ Y
Sbjct: 1129 WAQLS--QKALNLSKMVGKRMWSVQTPLW-QFPGIPKEILMKLEKNDL-VWERYYDLSSQ 1184
Query: 310 XXXXMKCKPDVVQP 351
+ C P + +P
Sbjct: 1185 ELGELICNPKMGRP 1198
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,260,112
Number of Sequences: 28952
Number of extensions: 224519
Number of successful extensions: 655
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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