Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306H01f
(513 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 31 0.10
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 29 0.41
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 26 2.9
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 26 3.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 5.0
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 5.0
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 25 5.0
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 25 5.0
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 25 5.0
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 25 5.0
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 25 5.0
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 5.0
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 25 5.0
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 25 5.0
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 5.0
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 6.7
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 25 6.7
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 25 8.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 25 8.8
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 25 8.8
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 31.1 bits (67), Expect = 0.10
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Frame = +1
Query: 112 ENKVDELPDLDNLLQCPVCYE-IPTGHIFQCNEGHNVCGRC----KVRLSVCPVCRALFF 276
+ K+ L LD+ L+C +C+E I C+ H C C +CP CRA
Sbjct: 14 QTKIPSLKGLDSSLRCLICHEYFRAPLITSCS--HTFCSFCIRDYLREHPMCPACRAPEQ 71
Query: 277 GTR---NYAMEELIANVRKLR 330
+R N +EE++ + + +R
Sbjct: 72 ESRLRKNTILEEILESFKVIR 92
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 29.1 bits (62), Expect = 0.41
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 118 KVDELPDLDNLL-QCPVCYEIPTGHIFQCNEGHNVCGRC 231
K+D L + L+ +CP+C P + N H CG C
Sbjct: 863 KIDTLKSFEALITECPICCNEPIQNPLLLNCKHACCGDC 901
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 343 GGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENN 447
G TRGL S SST +R S + + ED+ +
Sbjct: 24 GSSFTRGLKNSTLSSTSSRKSSDEKSRKSSEDKRS 58
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 268 LFFGTRNYAMEELIANVRKLRAFKLGGKVTRGLLAS 375
LF GTRN + ++A ++ R + + + GLL +
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTN 147
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 245 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 367
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 245 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 367
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 245 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 367
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 245 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 367
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 5.0
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +1
Query: 115 NKVDELPDLDNLLQCPVCY 171
N + + + D+ ++CPVCY
Sbjct: 156 NNLQRIEEPDDFVECPVCY 174
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 245 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 367
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 245 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 367
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 245 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 367
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 245 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 367
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 245 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 367
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.4 bits (53), Expect = 5.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +2
Query: 245 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 367
L ++AE F E G++ W+ L+ +G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQTGKVQGSNKGDRLTKTF 130
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 337 KLGGKVTRGLLASDSSSTPARDSG 408
+LGGK+ RG+ A S+T D G
Sbjct: 329 QLGGKIQRGIEAWGLSNTATSDEG 352
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +1
Query: 91 YIMSEIVENKVDELPDLDNLLQ--CPVCYEIPTGHIFQCNEGH 213
Y++S+ EN+V++ L L + + +E PTG+I C E H
Sbjct: 120 YLLSKKSENEVEQRL-LKALAEKTAKLIFEKPTGYIDSCEEFH 161
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 24.6 bits (51), Expect = 8.8
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +1
Query: 157 CPVCYEIPTGHIFQCNEGHNVCGRC 231
C C E P + + + G VCG C
Sbjct: 20 CSECREDPPNLVEEFSSGDTVCGSC 44
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +2
Query: 245 LSARYAEHYFLEPGTMPWKSSLQMSGN*ELLN*VEKLQEDY 367
L ++AE F E G++ W+ L+ G + N ++L + +
Sbjct: 90 LEQQFAERMFSENGSLTWQELLRQPGKVQGSNKGDRLTKTF 130
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 24.6 bits (51), Expect = 8.8
Identities = 13/58 (22%), Positives = 24/58 (41%)
Frame = -3
Query: 283 WFQKIVLCIPGRQKAELYICHIHYDLHCIGKYDL*GFHNILDTEVSYPSLAIRQPYFL 110
W+ K + + G + + + L C KY++ + L + + P AI FL
Sbjct: 168 WYPKTLWLLRGNHECAHLTDYFTFKLECTHKYNIKVYEACLQSFNALPLAAIMNKQFL 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,055,245
Number of Sequences: 5004
Number of extensions: 40218
Number of successful extensions: 136
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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