Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306H01f
(513 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43575| Best HMM Match : Sina (HMM E-Value=0) 64 9e-11
SB_12329| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.060
SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.079
SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24) 34 0.079
SB_36856| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-05) 30 0.97
SB_31664| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.97
SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.97
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30) 30 0.97
SB_10859| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06) 29 2.2
SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012) 29 3.0
SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09) 28 3.9
SB_28695| Best HMM Match : Ras (HMM E-Value=0) 28 5.2
SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011) 27 9.1
>SB_43575| Best HMM Match : Sina (HMM E-Value=0)
Length = 432
Score = 63.7 bits (148), Expect = 9e-11
Identities = 26/60 (43%), Positives = 37/60 (61%)
Frame = +1
Query: 136 DLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRALFFGTRNYAMEELIAN 315
DL ++ +CPVC++ I QC+ GH VC C+ +L+ CP CR RN AME+ +AN
Sbjct: 30 DLTSIFECPVCFDYVLPPILQCSSGHLVCSNCRPKLTCCPTCRGPLGSIRNLAMEK-VAN 88
>SB_12329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 34.3 bits (75), Expect = 0.060
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +1
Query: 124 DELPDLDNLLQCPVCYEIPTGHIF-QCNEGHNVC-GRCKVRLSVCPVCR 264
++L L++ L+C VC + + C GH VC +C + L CPVCR
Sbjct: 135 EKLSKLEDGLRCKVCMDEQINAVLIPC--GHMVCCEQCAMNLEACPVCR 181
>SB_28806| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 614
Score = 33.9 bits (74), Expect = 0.079
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 109 VENKVDE-LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRALFFGTR 285
V N V + LP + + +CP CY P + +G C RC V P + +
Sbjct: 192 VHNPVSKVLPSVQGVTRCPRCY--PMSKVLPNVQGVTQCSRCYPVSKVLPSVQGVTQCEM 249
Query: 286 NYAMEELIANVR 321
Y M +L+ NV+
Sbjct: 250 CYPMSKLLPNVQ 261
Score = 33.9 bits (74), Expect = 0.079
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +1
Query: 130 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRALFFGTRNYAMEELI 309
LP++ + QC +CY P + +G C RC V P + + R Y + +++
Sbjct: 257 LPNVQGVTQCEMCY--PMSKLLPSVQGVTQCPRCYPVSKVLPSVQGVTRCPRCYPVSKVL 314
Query: 310 ANVR 321
NVR
Sbjct: 315 PNVR 318
Score = 32.7 bits (71), Expect = 0.18
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +1
Query: 130 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRALFFGTRNYAMEELI 309
LP + + QCP CY P + +G C RC V P R R Y + +++
Sbjct: 276 LPSVQGVTQCPRCY--PVSKVLPSVQGVTRCPRCYPVSKVLPNVRGFTQCPRCYPVSKVL 333
Query: 310 ANVR 321
+V+
Sbjct: 334 PSVQ 337
Score = 32.3 bits (70), Expect = 0.24
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 130 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRALFFGTRNYAMEELI 309
LP + + QCP CY P + +G C RC V P + + R Y + +++
Sbjct: 352 LPGVQGVTQCPRCY--PMSEVLPSVQGVTQCPRCYPVSKVLPGVQGVTQCPRCYPVSKVL 409
Query: 310 ANVRKL 327
+V+ L
Sbjct: 410 PSVQGL 415
Score = 30.3 bits (65), Expect = 0.97
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +1
Query: 130 LPDLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRCKVRLSVCPVCRALFFGTRNYAMEELI 309
LP + + +CP CY P + +G C RC V P + + R Y + +++
Sbjct: 333 LPSVQGVTRCPRCY--PVSKVLPGVQGVTQCPRCYPMSEVLPSVQGVTQCPRCYPVSKVL 390
Query: 310 ANVR 321
V+
Sbjct: 391 PGVQ 394
>SB_28123| Best HMM Match : zf-NF-X1 (HMM E-Value=0.24)
Length = 453
Score = 33.9 bits (74), Expect = 0.079
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 184 GHIFQCNEGHNVC-GRC--KVRLSVCPVCRALFFGTRNYAMEE 303
GH ++C GH C G C ++ S CP C A G+R+ +E+
Sbjct: 381 GHWYKCPNGHFYCIGECGGAMQESTCPECGAAIGGSRHRLLED 423
>SB_36856| Best HMM Match : zf-C3HC4 (HMM E-Value=4.4e-05)
Length = 406
Score = 30.3 bits (65), Expect = 0.97
Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 8/45 (17%)
Frame = +1
Query: 157 CPVCYEIPTGHIFQCNEGHNVCGRC--------KVRLSVCPVCRA 267
CPVC E+ + HNVC C +R CP+CRA
Sbjct: 22 CPVCIEVFVEPKSLPSCAHNVCRECLEKITKRNSIRFVECPICRA 66
>SB_31664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 223
Score = 30.3 bits (65), Expect = 0.97
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Frame = +1
Query: 103 EIVENKVDELP-----DLDNLLQCPVCYEI---PTGHIFQCNEGHNVCGRCKVRLSVCPV 258
+ VE V+E P L+ + C +C E T +C G+++ ++R + CPV
Sbjct: 4 QTVERMVEEQPPPPSGSLEEPILCSICLEEVQKETSAELECGHGNHLKCVLRLRSATCPV 63
Query: 259 CR 264
CR
Sbjct: 64 CR 65
>SB_25082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 585
Score = 30.3 bits (65), Expect = 0.97
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 130 LPDLDNL--LQCPVCYEIPTGHIFQCNEGHNV-CGRCKVRLSVCPVCR 264
+PD+D QC +C E ++ N GH C C ++ CPVCR
Sbjct: 527 IPDMDENQGTQCVICLENQR-NVVLLNCGHVCSCRTCAQQIHQCPVCR 573
>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
Length = 514
Score = 30.3 bits (65), Expect = 0.97
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +1
Query: 157 CPVCYEIPTGHIF-QCNEGH-NVCGRCKVRLSVCPVCRA 267
C +C + G +F C GH + C C + +CP+CRA
Sbjct: 473 CKICMDAEVGIVFLPC--GHLSCCPGCAEGMELCPMCRA 509
>SB_10859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 387
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Frame = +1
Query: 136 DLDNLLQCPVCYEIPTGHIFQCNEGHNVCGRC------KVRLS--VCPVCRAL 270
++ + + CP+CYE HN+C C K +L CP+CRA+
Sbjct: 18 NIQDEISCPICYEDFEEPKCLPKCAHNICRECLLGIIEKAQLERFECPICRAI 70
>SB_5147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 347
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +1
Query: 184 GHIFQCNEGHNVC-GRC--KVRLSVCPVCRALFFGTRNYAMEE 303
GH ++C GH C G C + S CP C + GT + +E+
Sbjct: 273 GHWYKCPNGHFYCIGECGGATQESNCPECGSRIGGTGHRLLED 315
>SB_10657| Best HMM Match : zf-MYND (HMM E-Value=2.6e-06)
Length = 167
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 220 CGRCKVRLSVCPVCRALFFGTRNYAMEE 303
CG K+RLS C C +++ +RN E+
Sbjct: 131 CGLAKIRLSKCGKCLKVYYCSRNCQKED 158
>SB_29658| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0012)
Length = 450
Score = 28.7 bits (61), Expect = 3.0
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Frame = +1
Query: 127 ELPDLDNLLQCPVCY----EIPTGHI-FQCNEGHNVCGRCKVRL--SVCPVCRALFFGTR 285
+ P L CP+CY + G I C GH +C C +L + CP +A T
Sbjct: 4 QTPQWTEFLTCPICYHEFEDRQRGPISLAC--GHTICKACLSQLHKTQCPFDQA----TV 57
Query: 286 NYAMEELIANVRKLRAFKLGGKV 354
N +++L N L+ LG V
Sbjct: 58 NTDIDKLPVNTALLQLVVLGASV 80
>SB_42290| Best HMM Match : Band_41 (HMM E-Value=3.6e-09)
Length = 474
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +1
Query: 145 NLLQCPVCYEIPTGHIFQCNEGHNVCGR-CKVRLSVCPVCR 264
N L C +C + F C GH C + C L CP+C+
Sbjct: 402 NDLTCQICMDAEVNTAF-CPCGHVYCCQTCASNLYYCPLCK 441
>SB_28695| Best HMM Match : Ras (HMM E-Value=0)
Length = 1058
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 370 ASDSSSTPARDSGSDNAEYLGEDENNDXQI 459
A + A D G DN++Y G D+N+ I
Sbjct: 812 ADNGRDNDAHDGGGDNSDYDGSDDNDGGYI 841
>SB_6822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 373 SDSSSTPARDSGSDNAEYLGEDENND 450
SDS++TP RD SD+ L D+ +D
Sbjct: 711 SDSNATPRRDKRSDSNATLRRDKKSD 736
>SB_31648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
Frame = -1
Query: 207 FIALENMTCRDFIT--YW 160
++ALEN C+D+IT YW
Sbjct: 485 YLALENKNCKDYITEKYW 502
>SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)
Length = 434
Score = 27.1 bits (57), Expect = 9.1
Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 11/112 (9%)
Frame = +1
Query: 157 CPVCYEIPTGH------IFQCNEGHNVCGRCKVRLSVCPVCRALFFGTR-NYAMEELI-- 309
CP+C + +G + C GH C C CP C+ T N M+++I
Sbjct: 235 CPLCQTLMSGSRHTPVALIPC--GHTFCQMCTRDCRKCPDCQMRVKATAVNTVMQQIIGD 292
Query: 310 --ANVRKLRAFKLGGKVTRGLLASDSSSTPARDSGSDNAEYLGEDENNDXQI 459
A K R KL + + + S S +R + L E+ QI
Sbjct: 293 FKAQKEKERLAKLEEQTRKYIDEYQSLSLRSRALADEAESILNNMEDTTEQI 344
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,818,802
Number of Sequences: 59808
Number of extensions: 290776
Number of successful extensions: 832
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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