Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306H01f
         (513 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.9  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   4.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   7.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 277 GTRNYAMEELIANVRKLRAFKLG 345
           G R Y  EEL A +R +++ KLG
Sbjct: 587 GRRAYTEEELQAALRDIQSGKLG 609


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 187 HIFQCNEGHNVCGR 228
           HI     GH VCGR
Sbjct: 115 HICMLELGHEVCGR 128


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +2

Query: 383 VVHQQETVD 409
           VVH+QETVD
Sbjct: 179 VVHRQETVD 187


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +2

Query: 113 KIRLTNCQTWITYFSVQYVMKSLQVIFSNAMKVIMYVADVK 235
           ++ + N   W+ +      M  L ++ S AMK   Y  D +
Sbjct: 104 EMSIPNHYLWLYHDKTLLYMSKLTLVLSCAMKFESYPHDTQ 144


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
          protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 67 KNQSSHYVYLAISYNVKVKN 8
          +NQ  HY ++ + Y  K KN
Sbjct: 2  ENQKEHYRHILLFYFRKGKN 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,289
Number of Sequences: 438
Number of extensions: 2673
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)