Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    30   0.18 
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...    28   0.73 
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    26   3.0  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   6.8  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    25   6.8  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   9.0  

>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 5/99 (5%)
 Frame = +3

Query: 213 SEILNNELKDDPYVIVFLEETLSVEDFSRKNNEGDISIPYLYDNLSDALYLPSVEDAS-- 386
           SEIL  E+KD    IV  +E + V +   K N   ++ P  YD +      P VE+A   
Sbjct: 2   SEILIEEIKDQ---IVVKDEEIDVSELEVKLN---VTKPVGYDTVVVIEGAPVVEEAKQQ 55

Query: 387 ---RVLDEVAKGAVHVKLTQNGLSAAIEDKNNRFMFIAL 494
              R L       +  K+ +NG     E+KN + M + L
Sbjct: 56  DFFRFLSSKVLAKIG-KVKENGFYMPFEEKNGKKMSLGL 93


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +3

Query: 243 DPYVIVFLEETLSVEDFSRKNNEGDISIPYLYDNLSDALYLPSVEDASRVLDEVAKGAVH 422
           + Y IVF+E+  S ED+   +    +S     + ++D L + +V+  S+ ++     A+ 
Sbjct: 288 EKYPIVFIEDPFSEEDWGAFSY---MSSKTKVEVIADDLTVTNVKRLSKAIELKCANALL 344

Query: 423 VKLTQNG-LSAAIEDKN 470
           VK+ Q G LS  I+  N
Sbjct: 345 VKINQIGSLSETIDAAN 361


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/62 (22%), Positives = 27/62 (43%)
 Frame = +3

Query: 303 NNEGDISIPYLYDNLSDALYLPSVEDASRVLDEVAKGAVHVKLTQNGLSAAIEDKNNRFM 482
           N+  D S  +   N    + LPS  DAS ++    +   H+ L  +G+   + ++     
Sbjct: 310 NDSSDPSDNFTPSNTESTIDLPSATDASHLMSRPDREVNHLILCCHGIGQKMGERVETVS 369

Query: 483 FI 488
           F+
Sbjct: 370 FV 371


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 207 GFSEILNNELKDDPYVIVFLEETL 278
           GF E+L  EL+ D +V++ L  TL
Sbjct: 604 GFWEVLTEELQKDVHVLLSLVSTL 627


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 339 HTGTESKYHLRYFYVKNLRPIRF 271
           + G +S  H R+  VKN+ PI+F
Sbjct: 289 YNGLDSSKHPRWDRVKNIDPIKF 311


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 246  PYVIVFLEETLSVEDFSRKNNEGDI 320
            PY+   +  +LS+ D +RK+ EGD+
Sbjct: 1258 PYLADIVNYSLSILDDARKDPEGDL 1282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,797
Number of Sequences: 5004
Number of extensions: 40412
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)