Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43683| Best HMM Match : RVT_1 (HMM E-Value=0.024)                   31   0.76 
SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              29   3.1  
SB_50302| Best HMM Match : DUF963 (HMM E-Value=0.96)                   28   5.4  
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)                   27   7.1  
SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.4  

>SB_43683| Best HMM Match : RVT_1 (HMM E-Value=0.024)
          Length = 474

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
 Frame = +3

Query: 210 FSEILNNELKDDPYVIVFLEETLSVEDFS-RKNNEGDISIPYLYDNLSDAL-----YLPS 371
           FS+I    +    Y  +   + LS + +  RKN+   +++ +LYD LS+A+      L  
Sbjct: 101 FSKIFEKVVYKRLYNFLIKYDILSKKQYGFRKNHSTALALLHLYDTLSNAIDYKKYTLGG 160

Query: 372 VEDASRVLDEVAKGAVHVKLTQNGL 446
             D S+  D V  G +  KL   G+
Sbjct: 161 FIDLSKAFDTVNHGILLAKLHNYGI 185


>SB_25340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1105

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
 Frame = +3

Query: 72   CRLLFPLLVLSVASASTVPVFLWGDXXXXXXXXXXXXXXXTVSAQGF-SEILNNELKDDP 248
            C     +   +V +   VPVF+W                 T+S + F ++ L   L    
Sbjct: 868  CSAFVVICHFTVEAVFPVPVFIWSKESSLTQDSSPLAGH-TLSTEDFQNKYLQKVLHKPQ 926

Query: 249  YVIVFLEETLSVEDFSR------KNNEGDI-SIPYLYDNLSDALYLPSVE 377
             V +F+++ LSV+DF+R        + G   ++    D  + ++ LPSV+
Sbjct: 927  TVALFVQDRLSVDDFTRYGDAFTSGSHGAFNNLKITMDKANSSIVLPSVD 976


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 201 RTPCSMGSISGSFQSYWISRPIRTLAPSTHWPRLELATGT 82
           R PC+ G+ S    +  +  P+  + PST W  L    GT
Sbjct: 859 RVPCTAGTYSLEGVAACVDCPVGYMCPSTSWQPLRCPFGT 898


>SB_50302| Best HMM Match : DUF963 (HMM E-Value=0.96)
          Length = 427

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 213 SEILNNE--LKDDPYVIVFLEETLSVEDFSRKNNEGDISIPYLYDNLSDALYLPSVEDAS 386
           S +L+NE  +KD       L+    ++DF+  +NEG+I    + DN  +  Y   +++  
Sbjct: 104 SAVLDNEGEIKDS----AVLDNEGEIKDFAVLDNEGEIKYSAVLDNEGEIKYFAVLDNEE 159

Query: 387 RVLD 398
            + D
Sbjct: 160 EIKD 163



 Score = 27.5 bits (58), Expect = 7.1
 Identities = 15/63 (23%), Positives = 34/63 (53%)
 Frame = +3

Query: 210 FSEILNNELKDDPYVIVFLEETLSVEDFSRKNNEGDISIPYLYDNLSDALYLPSVEDASR 389
           +S +L+NE +   + ++  EE   ++D +  +NEG+I    ++DN  +    P +++   
Sbjct: 139 YSAVLDNEGEIKYFAVLDNEE--EIKDSTVLDNEGEIKDSAVFDNEGEIKASPVLDNEGE 196

Query: 390 VLD 398
           + D
Sbjct: 197 IKD 199


>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
          Length = 1223

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -2

Query: 139  HKNTGTVDALATLRTSNGNSKRQNAIFV-LH*WTLVD 32
            H     +D L TLRTSNG       +F     WTL++
Sbjct: 922  HNGENLIDGLYTLRTSNGEEFLTYCLFTSAVVWTLIE 958


>SB_6009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 895

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
 Frame = +3

Query: 297 RKNNEGDISIPYLYDNLSDAL----YLPSV-EDASRVLDEVAKGAVHVKLTQNGL 446
           RKN+   +++ +LYD LS A+    Y   V  D S+  D V  G +  KL   G+
Sbjct: 812 RKNHSTALALLHLYDTLSSAIDYKKYTLGVFIDLSKAFDTVNHGILLAKLHNYGI 866


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,982,990
Number of Sequences: 59808
Number of extensions: 288944
Number of successful extensions: 681
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)