Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative / phos...    27   5.8  
At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal hydrolase-r...    27   5.8  
At1g75370.1 68414.m08754 SEC14 cytosolic factor, putative / phos...    27   7.7  

>At4g36490.1 68417.m05181 SEC14 cytosolic factor, putative /
           phosphoglyceride transfer protein, putative similar to
           phosphatidylinositol transfer-like protein IV
           (GI:14486707) [Lotus japonicus]; contains Pfam PF00650 :
           CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO,
           N-terminus; supporting cDNA gi|23463078|gb|BT000834.1|
          Length = 543

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 202 ADTVLNGFDFREFPELLDKSPHKNTG 125
           ADTV+  FDF+E  E+L   P  + G
Sbjct: 109 ADTVMEEFDFKEIDEVLKYYPQGHHG 134


>At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1136

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 4/32 (12%)
 Frame = +3

Query: 267 EETLSVED----FSRKNNEGDISIPYLYDNLS 350
           E T++V D    +++ + +GD  IP+LYDN+S
Sbjct: 466 ERTINVFDPIAHYAKAHAQGDDIIPWLYDNIS 497


>At1g75370.1 68414.m08754 SEC14 cytosolic factor, putative /
           phosphatidylinositol transfer-like protein, putative
           similar to phosphatidylinositol transfer-like protein
           III (GI:14486705) [Lotus japonicus]; contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminu
          Length = 612

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 199 DTVLNGFDFREFPELLDKSPH 137
           DT+   F+F EF E+L   PH
Sbjct: 145 DTIFEDFEFEEFDEVLKYYPH 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,601,786
Number of Sequences: 28952
Number of extensions: 204342
Number of successful extensions: 565
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)