Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                28   4.1  
SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   5.4  
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  
SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_54833| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 117 KPPTLSPRPWSSVRMVTNTI 176
           KP  L P PW  VR+ TN I
Sbjct: 56  KPNPLGPEPWYKVRLPTNVI 75


>SB_11560| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 854

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +3

Query: 117 KPPTLSPRPWSSVRMVTNTI 176
           KP  L P PW  VR+ TN I
Sbjct: 81  KPNPLGPEPWYKVRLPTNVI 100


>SB_40653| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 672

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 137 PTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKVK 268
           P  +L ++GDE    +  T KTTE K   G+    +R+    VK
Sbjct: 46  PDSQLEEEGDESEDTSKLTGKTTEEKQNSGKLITTERSKTGHVK 89


>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 21/68 (30%), Positives = 28/68 (41%)
 Frame = +2

Query: 296 P*SKSRRXPTVLKSLTSGNSXPEEMKSCDDS*GRDLHQSLQGPVKGLYSEXGSPGPPIHE 475
           P  +  R PT+LK +  G   PE  +      G      L G  +GL    G PGP   E
Sbjct: 257 PKGEPGRAPTLLKGV-KGEPGPEGPQGPPGVRGDTGFPGLNG-TQGLPGPKGPPGPTGPE 314

Query: 476 HPRGTXXV 499
            P+G   +
Sbjct: 315 GPKGNMGI 322


>SB_20837| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -3

Query: 177 KLYSSPSLRSSTVGVTALAALRVIRPTPMV 88
           +L+ SP+LRS  +G+   +AL+ + P  MV
Sbjct: 13  RLFHSPNLRSDAIGIFR-SALKAVTPQEMV 41


>SB_37811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 738

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -3

Query: 216 NFISVVLKVEEVTKLYSSPSLRSSTVGVTALAAL-RVIRPTPMVFMNSSKFSEEVILYFL 40
           NF+  V   E    +   P +  +  G T+  ++ R  +PTP+    +    E +  YF+
Sbjct: 387 NFVQHVGLPERQLAIRVCPRMGKAHNGETSYGSIKRRAQPTPLNVQRTQGGHEGIAFYFI 446

Query: 39  PTNSIFID 16
            + S+FI+
Sbjct: 447 FSGSVFIN 454


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,523,997
Number of Sequences: 59808
Number of extensions: 273487
Number of successful extensions: 769
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)