Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G10f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...   115   3e-28
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    43   2e-06
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    43   2e-06
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.8  

>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score =  115 bits (276), Expect = 3e-28
 Identities = 51/84 (60%), Positives = 67/84 (79%)
 Frame = +2

Query: 29  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 208
           +F+GK+YK+ SSENFD+FMK +GVG++TRK  ++V+P VEL ++   Y L T+S FK TE
Sbjct: 3   DFLGKRYKLYSSENFDDFMKALGVGIMTRKVGSSVSPVVELTENNGLYTLKTTSPFKNTE 62

Query: 209 MKFKPGEEFEEDRADGAKVKSVCT 280
           +KFK GEEFEE+  DG KVKSVCT
Sbjct: 63  IKFKLGEEFEEETVDGRKVKSVCT 86



 Score = 30.7 bits (66), Expect = 0.009
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 372 KAVMTAKDVTCTRVYKVQ 425
           KA+M   D+ CTRVYK+Q
Sbjct: 114 KAIMKVDDIICTRVYKIQ 131


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 43.2 bits (97), Expect = 2e-06
 Identities = 25/72 (34%), Positives = 36/72 (50%)
 Frame = +2

Query: 26  MEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTT 205
           ++F GK ++  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T 
Sbjct: 2   VQFEGK-FQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTY 59

Query: 206 EMKFKPGEEFEE 241
              FK    FEE
Sbjct: 60  TKTFKMNVPFEE 71


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 42.7 bits (96), Expect = 2e-06
 Identities = 25/71 (35%), Positives = 35/71 (49%)
 Frame = +2

Query: 29  EFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTE 208
           +F GK ++  S  NF+EF K +G   +         P+ EL K+GDE+   +SS   T  
Sbjct: 1   QFEGK-FQFVSQNNFEEFAKVLGDQNLVNTVLQP-RPSFELSKNGDEWTFTSSSGDNTYT 58

Query: 209 MKFKPGEEFEE 241
             FK    FEE
Sbjct: 59  KTFKMNVPFEE 69


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 213 FISVVLKVEEVTKLYSSPSLRSSTV 139
           FIS+++  +E+  + +SP L + T+
Sbjct: 9   FISLIILNDEIYNIIASPQLNNPTL 33


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 404 HQSLQGPVKGLYSEXGSPG 460
           + S+ GPVKG+Y    + G
Sbjct: 620 YASVVGPVKGIYQHNVASG 638


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,215
Number of Sequences: 438
Number of extensions: 2315
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)