Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38720.1 68418.m04683 expressed protein predicted protein, Dr...    28   3.3  
At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to...    27   5.8  
At1g27040.2 68414.m03296 nitrate transporter, putative contains ...    27   5.8  
At1g27040.1 68414.m03297 nitrate transporter, putative contains ...    27   5.8  
At3g19890.1 68416.m02518 F-box family protein contains F-box dom...    27   7.7  

>At5g38720.1 68418.m04683 expressed protein predicted protein,
           Drosophila melanogaster
          Length = 306

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +2

Query: 98  VGLITRKAANAVTPTVELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADG 256
           VG   ++  N     VEL +D     L   S+ K    K + G+E +   ADG
Sbjct: 18  VGKKIQRKKNEKVSNVELSEDPQAAQLQAKSSEKPNRKKIQKGKEIKSSPADG 70


>At1g69850.1 68414.m08039 nitrate transporter (NTL1) identical to
           nitrate transporter (NTL1) GI:3377517 [Arabidopsis
           thaliana]
          Length = 585

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 50  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDG 163
           K T +E     ++ IGVGL+    A AV   VE+++ G
Sbjct: 414 KATKTETGVTHLQRIGVGLVLSILAMAVAALVEIKRKG 451


>At1g27040.2 68414.m03296 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 563

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 50  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 157
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 393 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 428


>At1g27040.1 68414.m03297 nitrate transporter, putative contains
           Pfam profile: PF00854 POT family; similar to nitrate
           transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
          Length = 567

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 50  KMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRK 157
           K+T SE     ++ IGVGL+    A AV   VEL++
Sbjct: 397 KVTKSEIGITHLQRIGVGLVLSIVAMAVAALVELKR 432


>At3g19890.1 68416.m02518 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 410

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 143 VELRKDGDEYNLVTSSTFKTTEMKFKPGEEFEEDRADGAKV 265
           VE+RKD     LV SS++  +  K    EE EED+    K+
Sbjct: 354 VEVRKDVYRSALVCSSSYVPSLEKINQIEEEEEDKCKSIKM 394


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,050,359
Number of Sequences: 28952
Number of extensions: 189231
Number of successful extensions: 498
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)