Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0188 - 27310814-27311138,27311197-27311547,27311682-273116...    28   5.2  
07_03_1157 - 24419157-24419948                                         27   6.9  

>01_06_0188 -
           27310814-27311138,27311197-27311547,27311682-27311693,
           27313598-27313662,27314945-27314968
          Length = 258

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 413 QSKLFSSRPKPEMLRHKQPPLLPRAERESHPSDGDR 520
           + KLF    KP+  R + P   PR  RE H  D  R
Sbjct: 159 RKKLFGHYRKPQRGRSRSPSPSPRHRRERHDRDDYR 194


>07_03_1157 - 24419157-24419948
          Length = 263

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 437 PKPEMLRHKQPPLLPRAERESHPS 508
           PKPE+  H   P LP+ E   HP+
Sbjct: 89  PKPELPPHPVVPELPKHEEPPHPA 112



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 437 PKPEMLRHKQPPLLPRAERESHP 505
           PKPE+  H   P LP+ E   HP
Sbjct: 190 PKPELPPHPAVPELPKHEEPPHP 212



 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 437 PKPEMLRHKQPPLLPRAERESHP 505
           PKPE+  H   P LP+ E   HP
Sbjct: 47  PKPEVPPHPAVPELPKHEEPPHP 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,804,789
Number of Sequences: 37544
Number of extensions: 244385
Number of successful extensions: 511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)