Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.082
SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)            29   3.1  
SB_1752| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_51996| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 33.9 bits (74), Expect = 0.082
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +3

Query: 348  TGKNSPDTTSHRGLQYTNSIETKANYSRQDRNR--KCYVISNHPCCQEPSEN 497
            +G+NS +   HR   +T +I  K   ++Q+RN   K  ++ NHP  Q PS+N
Sbjct: 1488 SGQNSYNAQVHRNPPFTVNIPPKPEEAQQNRNETIKISLVDNHPTGQ-PSQN 1538


>SB_7540| Best HMM Match : Transgly_assoc (HMM E-Value=0.46)
          Length = 320

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 271 LTALRPRVIFLIYRCTFNKCFNVVRYNTEVKLGMLGLS 158
           L A   R + L   CT+   F V+  ++ V +G+LGLS
Sbjct: 59  LRAASFRALALTLACTYGAMFAVIAGSSSVYIGLLGLS 96


>SB_1752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 350

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 320 QAKDRR*GRETSSVSFSHCIATTCDFSNLQM 228
           Q++ +  GRE    S + C  +TC+ SNLQ+
Sbjct: 176 QSRRKTRGREEGLGSSTSCATSTCEHSNLQI 206


>SB_51996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 453 NISGFGLDENSLLWFQCY 400
           N+  +GLD+N+  WF+ Y
Sbjct: 10  NLKAYGLDKNTTSWFESY 27


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,363,347
Number of Sequences: 59808
Number of extensions: 298716
Number of successful extensions: 647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)