Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G09f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein...    29   1.9  
At5g60300.2 68418.m07558 lectin protein kinase family protein co...    27   5.8  
At5g60300.1 68418.m07557 lectin protein kinase family protein co...    27   5.8  
At5g37920.1 68418.m04568 hypothetical protein contains Pfam PF04...    27   5.8  

>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 551

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +3

Query: 414 KANYSRQD-RNRKCYVISN--HPCCQEPSENLTLAM 512
           K  YS++D ++ +CY+  +  H CC EP  +L+ A+
Sbjct: 250 KYEYSKEDLKDVQCYICKSFGHLCCVEPGNSLSWAV 285


>At5g60300.2 68418.m07558 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain
           and PF00139: Legume lectins beta domain
          Length = 718

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 191 HGSKTWHVRAVECGTIFNP 135
           +GS ++HV AVE  TI+NP
Sbjct: 128 NGSSSYHVLAVELDTIWNP 146


>At5g60300.1 68418.m07557 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain
           and PF00139: Legume lectins beta domain
          Length = 718

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 191 HGSKTWHVRAVECGTIFNP 135
           +GS ++HV AVE  TI+NP
Sbjct: 128 NGSSSYHVLAVELDTIWNP 146


>At5g37920.1 68418.m04568 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430 
           contains Pfam PF04510 : Family of unknown function
           (DUF577)
          Length = 609

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -2

Query: 331 HVTTKLKIDVKEERRLLSRFLTALRPRVIFLIYRCTFNKCFNVVRYNTEVKLG 173
           H++ K KID+ E R+L   F++ L+ + +         +  N V Y   V  G
Sbjct: 367 HISKKAKIDISEMRQLQPLFMSCLKEQGVSYSMFQVLGQVVNHVAYEMLVYQG 419


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,575,365
Number of Sequences: 28952
Number of extensions: 207340
Number of successful extensions: 428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)