Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306G07f
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 34 0.015
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 29 0.41
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 1.3
SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces pomb... 25 6.7
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 25 6.7
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 6.7
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 25 6.7
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 25 8.9
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 8.9
SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8 |... 25 8.9
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 33.9 bits (74), Expect = 0.015
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -3
Query: 361 LPRNCSQAVVRSSSSFMILHWATPVTVSGTPWAVSTYSHIGFNVITSRDI 212
L R S + SSSS H + P T S +P + ST S G +VIT+ D+
Sbjct: 48 LYRRASTSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVITASDV 97
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 29.1 bits (62), Expect = 0.41
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 296 RPVQDHERRRTSHNCLRAVPGQDRQRD-*DDCPANVGGSFASYSRN 430
+PV +H+ ++TS VPG R +D DCP++ F S N
Sbjct: 218 QPVSEHKEKQTSFLRRFRVPGFSRDKDKTKDCPSSNSNPFHLASSN 263
Score = 25.4 bits (53), Expect = 5.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 431 SSENSSQMTLQRLQDSHLNLFDG 363
S++NSS + Q + DS++N+F G
Sbjct: 137 SNQNSSLKSFQSVPDSNVNVFGG 159
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -3
Query: 229 ITSRDIRWTSVTRHQAHAHPPTMVRFVVGPKQPPETISASLGPTV 95
+T ++ WTS T H A R+++ + P E IS ++G TV
Sbjct: 299 LTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFE-ISHNVGRTV 342
>SPBC365.14c |||UDP-glucose 4-epimerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 505 LSFERQHLRTSREWSLSLYTSSTV 434
L + RQH + R W+L T STV
Sbjct: 256 LDYLRQHFVSCRPWNLGSGTGSTV 279
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Frame = +3
Query: 120 IVSGGCFGPTTKRTIVGGW--AWAWCL 194
+++ G +G G W AWAWCL
Sbjct: 343 LLTSGWWGMARHINYFGDWIMAWAWCL 369
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +3
Query: 345 EQFLGKTVKEIKMTVLQTLEGHLRAILG-TLTVEEVYKDRDHSRLVR 482
+ FLG ++ M +++T + +L +LG L ++++ D +S +R
Sbjct: 230 DAFLGSEAVDVLMHIVRTTDRNLALLLGRALDSQKMFHDVTYSHRLR 276
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = -3
Query: 460 LSLYTSSTVRVPRIARK*PSNVCRTV--ILISLTVLPRNCSQAVV 332
L L+TS T P++ N+CR++ I S + PR+ S V+
Sbjct: 165 LVLHTSGTTGRPKVVPLTHKNLCRSIHNITTSYRLDPRDTSYVVM 209
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 101 DSVDVAHFESFYSDFHDTHTALHN 30
DS+++ +SF SD ++HT N
Sbjct: 109 DSIEMGRMQSFESDQQESHTGQAN 132
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 24.6 bits (51), Expect = 8.9
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 5/44 (11%)
Frame = +2
Query: 128 RWLFRADHETYHSRWMG-----MGLVSGYGRPTYIP*SDDIEPD 244
RWLFR + + W+G V+GY R Y +D I D
Sbjct: 1386 RWLFRENSRNQANSWIGNCQLCRTRVTGYKRKIYGKKADKIAMD 1429
>SPAC13A11.01c |rga8|SPAC2F7.18c|GTPase activating protein Rga8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 24.6 bits (51), Expect = 8.9
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +3
Query: 300 QCKIMNEDELLTTACEQFLGKTVKEIKMTVLQ--TLEGHLRAILGT 431
Q + N+D+L+ +F + +KE+ VLQ L+ + ILGT
Sbjct: 184 QSLLENDDDLIQLGFMEFRPEELKEVLAQVLQEIPLQDYRVPILGT 229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,298,326
Number of Sequences: 5004
Number of extensions: 48589
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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