Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306G07f
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0433 + 33884858-33884926,33885027-33885263 32 0.31
10_03_0016 - 7099862-7099967,7100059-7100357,7101862-7102171,710... 31 0.42
11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993 31 0.73
01_06_1331 + 36373059-36373338,36374190-36374263,36374530-363746... 29 1.7
12_02_1270 + 27466516-27466621,27466722-27466885,27467385-274681... 29 2.9
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 29 2.9
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904... 29 2.9
12_02_0754 - 22817277-22817657,22817796-22817927,22818026-228182... 28 3.9
09_04_0639 - 19162501-19162878,19162974-19163126,19163366-191640... 27 6.8
08_02_0202 - 14202996-14203241,14203630-14203823,14203947-142045... 27 6.8
06_01_0939 + 7232682-7232933,7233048-7233228,7233354-7233463,723... 27 6.8
06_01_0149 + 1124427-1126805 27 6.8
09_02_0393 + 8510089-8510274,8510450-8510806,8510889-8511011,851... 27 8.9
08_01_0626 - 5445676-5446687,5447099-5447430 27 8.9
07_01_0326 + 2285964-2286431 27 8.9
>03_06_0433 + 33884858-33884926,33885027-33885263
Length = 101
Score = 31.9 bits (69), Expect = 0.31
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 292 PVTVSGTPWAVSTYSHIGFNVITSRDIRWTSVTRHQAHAHPP 167
P VSGT V T F+ +TS +RWT T+H + P
Sbjct: 24 PKWVSGTTRRVYTQFVADFDQLTSNRVRWTPYTQHDDNDRAP 65
>10_03_0016 -
7099862-7099967,7100059-7100357,7101862-7102171,
7104402-7105054,7105266-7105554,7106549-7106634
Length = 580
Score = 31.5 bits (68), Expect = 0.42
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 283 VSGTPWAVSTYSHIGFNVITSRDIRWTSVTRHQAHAHPP 167
VSGT V T F+ + +RWTS T+H + H P
Sbjct: 450 VSGTTRRVYTQFVADFDQLMPDRVRWTSYTQHDVNDHAP 488
>11_06_0763 - 27101764-27104017,27104523-27105055,27106403-27106993
Length = 1125
Score = 30.7 bits (66), Expect = 0.73
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 183 AWCLVTDVQRISLEVMTLNPMCEYVETAQGVPLTVTGVA 299
AW L V R S+ M +NP + V+ G+PL + V+
Sbjct: 438 AWLLCDKVARKSVTCMNINPCYDIVDMCYGMPLALIRVS 476
>01_06_1331 +
36373059-36373338,36374190-36374263,36374530-36374699,
36374731-36374822,36375087-36375323,36375922-36375980,
36376462-36376644,36377347-36377437,36377959-36378002,
36378085-36378207
Length = 450
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +3
Query: 30 VVKCSVCIVKVTVKGFKMGNIHTVGPNEAL--IVSGGCFGPTTKRTIVGGWAWAW 188
VV + +V K + GN TV P + SG GP+ R + W W +
Sbjct: 161 VVMITAYLVSFVPKKYNKGNSITVSPRSQVSRTSSGAASGPSESRDLGQVWGWGY 215
>12_02_1270 +
27466516-27466621,27466722-27466885,27467385-27468173,
27468263-27468479,27469078-27469256,27470233-27470474,
27470607-27470994
Length = 694
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 142 PKQPPETISASLGPTVWMLPILNPFTVTF 56
PK P T + L P VW L + NP+ +F
Sbjct: 442 PKDNPYTDDSDLEPEVWALGLRNPWRCSF 470
>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 506 IVIRAPALAYKPRMVPVFVHLFYCKSSENSS 414
+++ P + Y PR++PV+V+ + S++N S
Sbjct: 978 VLLSPPIVVYSPRVLPVYVYDAHADSAKNVS 1008
>01_07_0298 - 42586007-42589742,42590167-42590280,42590295-42590437,
42591174-42591347
Length = 1388
Score = 28.7 bits (61), Expect = 2.9
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = +3
Query: 30 VVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQ 209
V+ C C+V V + N + P + LI G P+ K +VGG VTDV
Sbjct: 1167 VIYCLRCLVDVDIPL----NQGCLAPVKILIPKGSFLSPSDKAAVVGGNVLTSQRVTDVV 1222
Query: 210 RISLEVMTLNPMC 248
++ + + C
Sbjct: 1223 LMAFQACACSQGC 1235
>12_02_0754 -
22817277-22817657,22817796-22817927,22818026-22818272,
22818473-22818909
Length = 398
Score = 28.3 bits (60), Expect = 3.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 18 VIVLVVKCSVCIVKVTVKGFKMGNIHTVGPNEAL 119
V++ +KC C+ K+ + F GN+ + N +L
Sbjct: 255 VVIDFIKCFPCVEKLYIVAFNQGNLKNIRRNVSL 288
>09_04_0639 -
19162501-19162878,19162974-19163126,19163366-19164046,
19164747-19164856,19165050-19165125
Length = 465
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/61 (21%), Positives = 29/61 (47%)
Frame = +3
Query: 213 ISLEVMTLNPMCEYVETAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTVL 392
+SLE +TLN + ++ P T + + +M + L+ +GK +++ V+
Sbjct: 395 VSLECLTLNTTLGFASRSEHSPGTCFPMGKAVLMGVPKALSAIQTYIVGKVPSTVRLNVM 454
Query: 393 Q 395
+
Sbjct: 455 E 455
>08_02_0202 -
14202996-14203241,14203630-14203823,14203947-14204559,
14205422-14205535
Length = 388
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 425 ENSSQMTLQRLQDS-HLNLFDGLAQELLAGSCEKFVFVHDLALGD 294
++ + L RL D ++ L D + G C KF +D+ +GD
Sbjct: 319 QDEKTIRLSRLGDKWNIRLSDSSGNRRMVGGCRKFAEDNDVGVGD 363
>06_01_0939 +
7232682-7232933,7233048-7233228,7233354-7233463,
7233833-7233911,7233979-7234046,7234129-7234195,
7234704-7234834
Length = 295
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 344 AGSCEKFVFVHDLALGDSGHRERHSLGRFNVLAH 243
A + +F+ H L LG HR RH R+ +L H
Sbjct: 13 AAAARRFLLPH-LFLGRRRHRHRHDQVRYTILHH 45
>06_01_0149 + 1124427-1126805
Length = 792
Score = 27.5 bits (58), Expect = 6.8
Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 14/120 (11%)
Frame = +3
Query: 171 GWAWAWCLVTDVQRISLEVMTL-------NP--MCEYVETAQGVPLTVTGVA---QCK-- 308
G W C VQR+ + M NP + Y+ +P + G A +C+
Sbjct: 177 GILWVLCAAKLVQRVVINEMARRSSGHGKNPRLISSYMAATTPIPTDMAGAAALERCRYA 236
Query: 309 IMNEDELLTTACEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDHSRLVRKC 488
+M E+ ++ A G E+ + V +T E LTV ++++ R+H +L R C
Sbjct: 237 VMGEENMVVKA-----GPRGYELDLDVAETDE--------VLTVGKIWRTREHPKLKRLC 283
>09_02_0393 +
8510089-8510274,8510450-8510806,8510889-8511011,
8511209-8511523,8511576-8511682,8512559-8512629,
8512952-8513029,8513390-8513454,8514224-8514274,
8514373-8514414,8514785-8515105,8515154-8517880
Length = 1480
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/14 (85%), Positives = 12/14 (85%)
Frame = -2
Query: 347 LAGSCEKFVFVHDL 306
LAGS EKFV VHDL
Sbjct: 950 LAGSREKFVIVHDL 963
>08_01_0626 - 5445676-5446687,5447099-5447430
Length = 447
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 246 TSGSMSSLQGIYVGRP*PDTRPMPIHLLWY 157
+ MSS +YVGR P + + IH+ W+
Sbjct: 147 SGNKMSSEFLVYVGRARPQLKRLKIHMRWF 176
>07_01_0326 + 2285964-2286431
Length = 155
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -3
Query: 340 AVVRSSSSFMILHWATPV--TVSGTPW 266
A V + SS++++HW T V +S PW
Sbjct: 28 AFVSAGSSWLLMHWPTTVGSAISMAPW 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,954,967
Number of Sequences: 37544
Number of extensions: 367331
Number of successful extensions: 1173
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -