Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306G07f
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.) 208 2e-54
SB_21580| Best HMM Match : Flotillin (HMM E-Value=0) 58 3e-09
SB_740| Best HMM Match : DUF1131 (HMM E-Value=4.8) 31 0.74
SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.98
SB_34370| Best HMM Match : DUF1656 (HMM E-Value=0.59) 28 4.0
SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39) 28 5.3
SB_8773| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3) 27 6.9
SB_53414| Best HMM Match : V-set (HMM E-Value=8.7) 27 6.9
SB_11880| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.92) 27 6.9
SB_11473| Best HMM Match : V-set (HMM E-Value=8.7) 27 6.9
SB_6559| Best HMM Match : adh_short (HMM E-Value=4.3) 27 6.9
SB_26620| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_19700| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 208 bits (509), Expect = 2e-54
Identities = 98/136 (72%), Positives = 114/136 (83%), Gaps = 1/136 (0%)
Frame = +3
Query: 81 MGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQRISLEVMTLNPMCEYVE 260
MGN +TVGPNEAL+VSGGC G K+T++GGWA+AW VTDVQ ISLEVMTLNP CE VE
Sbjct: 284 MGNCYTVGPNEALVVSGGCCGSAAKKTVIGGWAFAWACVTDVQSISLEVMTLNPTCEAVE 343
Query: 261 TAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTV 440
TAQGV +TVTGVAQ K+M E LL TACEQFLGKT ++I+ VLQTLEGHLRAILGTL+V
Sbjct: 344 TAQGVAVTVTGVAQVKVMTEPRLLKTACEQFLGKTTRQIESVVLQTLEGHLRAILGTLSV 403
Query: 441 EEVYKDRD-HSRLVRK 485
EE+YKDR+ + LVR+
Sbjct: 404 EEIYKDREAFAALVRE 419
>SB_21580| Best HMM Match : Flotillin (HMM E-Value=0)
Length = 393
Score = 58.4 bits (135), Expect = 3e-09
Identities = 27/56 (48%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Frame = +3
Query: 294 VAQCKIMNED-ELLTTACEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKD 458
+ Q KI ++ E+L AC+QFLGK+ ++ + L+TLEGH RAI+GT+TVE D
Sbjct: 63 ILQVKIQGQNQEMLHAACQQFLGKSAEQTRHIALETLEGHQRAIMGTMTVEVASSD 118
>SB_740| Best HMM Match : DUF1131 (HMM E-Value=4.8)
Length = 638
Score = 30.7 bits (66), Expect = 0.74
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -3
Query: 358 PRNCSQAVVRSSSSFMILHWATPVTVSGTPWAVSTYSHIGFNVITSRDIRWTSVTR-HQA 182
P N A +RS ++L P S +P++ S Y+ + V+ RD VT+ ++
Sbjct: 17 PSNNMDATIRSPGDPLVLERPPPRWSSNSPYSESYYNSLAV-VLQRRDWENPGVTQLNRL 75
Query: 181 HAHPP 167
AHPP
Sbjct: 76 AAHPP 80
>SB_18600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2388
Score = 30.3 bits (65), Expect = 0.98
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -3
Query: 187 QAHAHPPTMVRFVVGPKQPPETISASLGPTVWMLPILNPF 68
QA PPTM++ + P PP I P+V + P NPF
Sbjct: 402 QASIPPPTMIQTLPPPSVPPPPIGVPNRPSV-LYPNNNPF 440
>SB_34370| Best HMM Match : DUF1656 (HMM E-Value=0.59)
Length = 764
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 296 DSGHRERHSLGRFNVLAHRVQCHHFKGYTLDVRNQTP 186
DSGH R +L NV + + H + TLD R+ P
Sbjct: 342 DSGHVRRKTLDSRNVRRNTLDSRHVRRNTLDSRHVRP 378
>SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39)
Length = 407
Score = 27.9 bits (59), Expect = 5.3
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = +3
Query: 102 GPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQRISLEVMTLNPM--CEYVETAQGV 275
GPNE L+ +GGC T ++GG++ CL +SL+ T + C Y G
Sbjct: 325 GPNECLVNNGGC--SHTCLNLIGGYS---CLCPPGFELSLDKRTCTDINECGYNRGGCGQ 379
Query: 276 PLTVT-GVAQCKIMN 317
T + G C +N
Sbjct: 380 ICTNSLGSYNCSCLN 394
>SB_8773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 424
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -2
Query: 332 EKFVFVHDLALGDSGHRERHSLGRFNVL--AHRVQCH 228
EK V L L D GHR +HSL N L H H
Sbjct: 52 EKCVSALKLNLRDQGHRNKHSLSPPNALMATHNASSH 88
>SB_2427| Best HMM Match : zf-C3HC4 (HMM E-Value=0.3)
Length = 378
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 17 CYRFSCEVQCVYRESHCKRIQNGQHPHCR 103
C SC QC ++ H R + PHCR
Sbjct: 51 CCGQSCHQQCFWKWIHTHRTERITCPHCR 79
>SB_53414| Best HMM Match : V-set (HMM E-Value=8.7)
Length = 194
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 374 D*DDCPANVGGSFASYSRNSYSRRGVQRQGPFAAC 478
D DDCP+N GS S S S SR+ + + C
Sbjct: 6 DHDDCPSNSSGSTDSTSICSSSRQTITKMWKLDMC 40
>SB_11880| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.92)
Length = 425
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Frame = +3
Query: 222 EVMTLNPMCEYVETAQGVPLTVTG--VAQCKIMNEDELLTTACEQFLGKTVKEIKMT 386
EV T E TA V T T V E + TTA E + T KE+ MT
Sbjct: 142 EVTTTTTAAEATTTATEVTTTTTATEVTMTTTATELTMTTTATEVTMTTTAKEVTMT 198
>SB_11473| Best HMM Match : V-set (HMM E-Value=8.7)
Length = 194
Score = 27.5 bits (58), Expect = 6.9
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 374 D*DDCPANVGGSFASYSRNSYSRRGVQRQGPFAAC 478
D DDCP+N GS S S S SR+ + + C
Sbjct: 6 DHDDCPSNSSGSTDSTSICSSSRQTITKMWKLDMC 40
>SB_6559| Best HMM Match : adh_short (HMM E-Value=4.3)
Length = 253
Score = 27.5 bits (58), Expect = 6.9
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = -3
Query: 382 ILISLTVLPRNCSQAVVRSSSSFMILHWATPVTVSGTPWAVSTYSHIGFNVI 227
+ IS T L S+ R++SS W+ P+ + T WAVSTY G NV+
Sbjct: 98 LAISGTFLHTIISRIFTRNASSAA---WSGPLKLWRTGWAVSTY---GSNVL 143
>SB_26620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 433
Score = 27.1 bits (57), Expect = 9.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 221 KGYTLDVRNQTPGPCPSTYY 162
KG+ LD +QT PCP +Y
Sbjct: 102 KGFFLDKTSQTAKPCPPGFY 121
>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 27.1 bits (57), Expect = 9.2
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -2
Query: 470 RMVPVFVHLFYCKSSEN-SSQMTLQRLQDSHLNLFDGL 360
+++P + + K ++ SS+ Q L+D+ NLFDGL
Sbjct: 605 KLIPKYHEILIKKIEQDPSSEKRYQALRDTTYNLFDGL 642
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,343,046
Number of Sequences: 59808
Number of extensions: 414583
Number of successful extensions: 1280
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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