Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G07f
         (516 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.           27   0.38 
DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domai...    25   1.5  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    24   3.5  
AY341186-1|AAR13750.1|  189|Anopheles gambiae GNBP A1 protein.         24   3.5  
AY341185-1|AAR13749.1|  189|Anopheles gambiae GNBP A1 protein.         24   3.5  
AY341183-1|AAR13747.1|  189|Anopheles gambiae GNBP A1 protein.         24   3.5  
AY341187-1|AAR13751.1|  189|Anopheles gambiae GNBP A1 protein.         23   4.6  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   6.1  

>AY344830-1|AAR05801.1|  334|Anopheles gambiae ICHIT protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 0.38
 Identities = 24/91 (26%), Positives = 34/91 (37%)
 Frame = -3

Query: 295 TPVTVSGTPWAVSTYSHIGFNVITSRDIRWTSVTRHQAHAHPPTMVRFVVGPKQPPETIS 116
           T  T +  P   +T+S +     T+    W   T       PPT   +   P  PP T +
Sbjct: 193 TATTTTHAPTTTTTWSDLPPPPPTTTTTVWIDPTATTTTHVPPTTTTWSDLPPPPPTTTT 252

Query: 115 ASLGPTVWMLPILNPFTVTFTIHTLHFTTKT 23
                TVW     +P T T T +T  +   T
Sbjct: 253 T----TVW----TDPTTTTTTDYTTAYPPTT 275


>DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domain
           protein protein.
          Length = 285

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 18  VIVLVVKCSVCIVKVTVKGFKMG 86
           V+++   CS+C  + TVK +  G
Sbjct: 135 VLIVAAGCSICAAQTTVKRYPTG 157


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 142  PKQPPETISASLGPTVWMLPILNPFTVT 59
            P QPPET++ +    + + P + P T T
Sbjct: 1471 PVQPPETLTPAGSVAITVEPSVPPATTT 1498


>AY341186-1|AAR13750.1|  189|Anopheles gambiae GNBP A1 protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -3

Query: 175 HPPTMVRFVVGPKQPPETISASLGPTVWMLPILNPFTVTF 56
           H  T  +  V PK    T + ++ PT    P   P   TF
Sbjct: 112 HTVTRTKATVAPKSTTTTTTTTVKPTTTTPPPCPPTLTTF 151


>AY341185-1|AAR13749.1|  189|Anopheles gambiae GNBP A1 protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -3

Query: 175 HPPTMVRFVVGPKQPPETISASLGPTVWMLPILNPFTVTF 56
           H  T  +  V PK    T + ++ PT    P   P   TF
Sbjct: 112 HTVTRTKATVAPKSTTTTTTTTVKPTTTTPPPCPPTLTTF 151


>AY341183-1|AAR13747.1|  189|Anopheles gambiae GNBP A1 protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -3

Query: 175 HPPTMVRFVVGPKQPPETISASLGPTVWMLPILNPFTVTF 56
           H  T  +  V PK    T + ++ PT    P   P   TF
Sbjct: 112 HTVTRTKATVAPKSTTTTTTTTVKPTTTTPPPCPPTLTTF 151


>AY341187-1|AAR13751.1|  189|Anopheles gambiae GNBP A1 protein.
          Length = 189

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -3

Query: 175 HPPTMVRFVVGPKQPPETISASLGPTVWMLPILNPFTVTF 56
           H  T  +  V PK    T + ++ PT    P   P   TF
Sbjct: 112 HTITRTKATVAPKSTTTTTTTTVKPTTTTPPPCPPTLTTF 151


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.0 bits (47), Expect = 6.1
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = +3

Query: 282 TVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTVLQTLE 404
           ++ G+A CK   +   +     + L K +   K  + QT E
Sbjct: 10  SIHGIASCKRHRDPNAIQRVAREGLAKGISIKKCDIFQTCE 50


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 609,619
Number of Sequences: 2352
Number of extensions: 13674
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46937349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)