Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G07f
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099920-5|AAK29843.2|  361|Caenorhabditis elegans Serpentine re...    30   1.1  
Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.    29   2.6  
AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.    29   2.6  
AC006661-5|AAF39890.2|  488|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z83233-9|CAB05766.1|  405|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    28   3.4  
AC006661-4|ABB88208.1|  561|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z19152-1|CAA79536.1|  531|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z81593-6|CAB04740.2|  367|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical p...    27   8.0  
Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myos...    27   8.0  
AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm rece...    27   8.0  

>AF099920-5|AAK29843.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein94 protein.
          Length = 361

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 336 TACEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKDRDHSRLVRK 485
           TA +  +GK  + I  T  + +   L  IL TL + E+ K +DH R+  +
Sbjct: 221 TANDGLVGKVYQLINGTFSKLIPCFLLPILTTLLIAELRKAKDHQRITER 270


>Z81467-3|CAC42255.1| 1143|Caenorhabditis elegans Hypothetical
           protein C12C8.3b protein.
          Length = 1143

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 276 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 431
           PL    VA  +++NE +LL   CE+  G T+K+I    +T   T E  +RA   T
Sbjct: 511 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 564


>Z81467-2|CAC42254.1| 1147|Caenorhabditis elegans Hypothetical
           protein C12C8.3a protein.
          Length = 1147

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 276 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 431
           PL    VA  +++NE +LL   CE+  G T+K+I    +T   T E  +RA   T
Sbjct: 515 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 568


>AF195611-1|AAF15530.1| 1147|Caenorhabditis elegans LIN-41B protein.
          Length = 1147

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 276 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 431
           PL    VA  +++NE +LL   CE+  G T+K+I    +T   T E  +RA   T
Sbjct: 515 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 568


>AF195610-1|AAF15529.1| 1143|Caenorhabditis elegans LIN-41A protein.
          Length = 1143

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +3

Query: 276 PLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEI---KMTVLQTLEGHLRAILGT 431
           PL    VA  +++NE +LL   CE+  G T+K+I    +T   T E  +RA   T
Sbjct: 511 PLGDIRVAVGEVVNESQLLQWQCEK-TGDTIKQIIDGIVTNATTAENEIRAAFDT 564


>AC006661-5|AAF39890.2|  488|Caenorhabditis elegans Hypothetical
           protein H20J04.4a protein.
          Length = 488

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
 Frame = +3

Query: 72  GFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQRISLEVMTLNPMCE 251
           GF++G++H+  P +  + +   F   T + I+     +  L  D+  + L V    P C 
Sbjct: 361 GFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGL--DIPHVDLVVNHNVPQCP 418

Query: 252 --YVE-TAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMTV 389
             Y+    +       G A   +   D  L  A EQ +GK + E+K+ +
Sbjct: 419 KTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVKI 467


>Z83233-9|CAB05766.1|  405|Caenorhabditis elegans Hypothetical
           protein K06B4.10 protein.
          Length = 405

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 101 DSVDVAHFESFYSDFHDTHTALHN 30
           D +D+AH ESF+++ H T T   N
Sbjct: 230 DYIDLAHSESFFTNDHQTFTERDN 253


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 343 QAVVRSSSSFMILHWATPVTVSGTPWAVS-TYSHIGFNVITSRDIRWTSVTRH 188
           Q +  + S   + H  T +T++GT W VS   S I F ++   ++RW +   H
Sbjct: 178 QIIAITCSCLALFHKFTIITINGT-WIVSCACSSIVFFLVERINLRWKAEMEH 229


>AC006661-4|ABB88208.1|  561|Caenorhabditis elegans Hypothetical
           protein H20J04.4b protein.
          Length = 561

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
 Frame = +3

Query: 72  GFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQRISLEVMTLNPMCE 251
           GF++G++H+  P +  + +   F   T + I+     +  L  D+  + L V    P C 
Sbjct: 361 GFRVGSLHSQIPQKQRLAALSAFRSKTLQVIICTDVASRGL--DIPHVDLVVNHNVPQCP 418

Query: 252 --YVE-TAQGVPLTVTGVAQCKIMNEDELLTTACEQFLGKTVKEIKMT 386
             Y+    +       G A   +   D  L  A EQ +GK + E+K++
Sbjct: 419 KTYIHRVGRSARAGRFGSALSFVTQYDVELLQAVEQVIGKKLDELKVS 466


>Z19152-1|CAA79536.1|  531|Caenorhabditis elegans Hypothetical
           protein B0464.1 protein.
          Length = 531

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +3

Query: 306 KIMNEDELLTTACEQFLGKTVKEIKMTVLQTLEGHLRAILGTLTVEEVYKDR 461
           +I +ED+L +T  E+FLGK VKE   T    L+    ++    T+ + + +R
Sbjct: 391 EIGDEDDL-STPVEKFLGKLVKEKYSTDFYVLDKFPLSVRPFYTMPDAHDER 441


>Z81593-6|CAB04740.2|  367|Caenorhabditis elegans Hypothetical
           protein T20B3.12 protein.
          Length = 367

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +2

Query: 329 SHNCLRAVPGQDRQRD*DDCPANVGGSFASYSRNSYSRRGV 451
           +H C + V G   + D D    N+GGS     RN    + V
Sbjct: 118 NHKCWKLVTGPQNRADADQACNNLGGSTLFSIRNDQDNQAV 158


>Z75550-15|CAA99931.2| 2003|Caenorhabditis elegans Hypothetical
           protein F20G4.3 protein.
          Length = 2003

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 334 VRSSSSFMILHWATPVTVSGTPWAVSTYSHIGFNVI 227
           +RS S F ++H+A  V      W V     +  NVI
Sbjct: 578 IRSRSDFAVVHYAGRVDYQSEGWRVKNMDPLNENVI 613


>Z75538-4|CAA99841.2| 2003|Caenorhabditis elegans Hypothetical
           protein F20G4.3 protein.
          Length = 2003

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 334 VRSSSSFMILHWATPVTVSGTPWAVSTYSHIGFNVI 227
           +RS S F ++H+A  V      W V     +  NVI
Sbjct: 578 IRSRSDFAVVHYAGRVDYQSEGWRVKNMDPLNENVI 613


>U49263-1|AAC47238.1| 2003|Caenorhabditis elegans non-muscle myosin
           heavy chain II protein.
          Length = 2003

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 334 VRSSSSFMILHWATPVTVSGTPWAVSTYSHIGFNVI 227
           +RS S F ++H+A  V      W V     +  NVI
Sbjct: 578 IRSRSDFAVVHYAGRVDYQSEGWRVKNMDPLNENVI 613


>AC006777-8|AAK72305.2|  367|Caenorhabditis elegans Seven tm
           receptor protein 221 protein.
          Length = 367

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 337 VVRSSSSFMILHWATPVTVSGTPWAVSTY 251
           + RS  S+ IL W +   V GT WAV+ Y
Sbjct: 126 LARSFQSWKILLWFSLPLVFGTVWAVAGY 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,171,162
Number of Sequences: 27780
Number of extensions: 298224
Number of successful extensions: 876
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)