Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306G07f
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g79350.1 68414.m09247 DNA-binding protein, putative contains ... 30 0.80
At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protei... 28 4.3
At1g55350.4 68414.m06326 calpain-type cysteine protease family i... 28 4.3
At1g55350.3 68414.m06325 calpain-type cysteine protease family i... 28 4.3
At1g55350.2 68414.m06324 calpain-type cysteine protease family i... 28 4.3
At1g55350.1 68414.m06323 calpain-type cysteine protease family i... 28 4.3
At5g58880.1 68418.m07377 hypothetical protein 27 5.7
At5g01920.1 68418.m00111 protein kinase family protein contains ... 27 7.5
At3g46980.2 68416.m05102 transporter-related low similarity to b... 27 7.5
At3g46980.1 68416.m05101 transporter-related low similarity to b... 27 7.5
At3g01760.1 68416.m00114 lysine and histidine specific transport... 27 7.5
At5g61160.1 68418.m07673 transferase family protein similar to a... 27 9.9
At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger) fa... 27 9.9
At2g17120.1 68415.m01976 peptidoglycan-binding LysM domain-conta... 27 9.9
At1g24706.1 68414.m03104 expressed protein 27 9.9
At1g07670.1 68414.m00824 calcium-transporting ATPase 4, endoplas... 27 9.9
>At1g79350.1 68414.m09247 DNA-binding protein, putative contains
Pfam PF00628: PHD-finger domain; contains TIGRFAMS
TIGR01053: zinc finger domain, LSD1 subclass; contains
Pfam PF00271: Helicase conserved C-terminal domain;
similar to WSSV086 (GI:19481678)[shrimp white spot
syndrome virus]; similar to nuclear protein Np95
(GI:17939938) [Mus musculus]
Length = 1299
Score = 30.3 bits (65), Expect = 0.80
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 202 SVTRHQAHAHPPTMVRFVVGPKQPPETIS 116
S+T Q+H++PPT V P PPE ++
Sbjct: 152 SLTASQSHSNPPTPAAPTVPPPPPPEEVN 180
>At5g37830.1 68418.m04555 hydantoinase/oxoprolinase family protein
contains Pfam profiles: PF02538 hydantoinase
B/oxoprolinase, PF01968 hydantoinase/oxoprolinase,
PF05378 hydantoinase/oxoprolinase N-terminal region
Length = 1266
Score = 27.9 bits (59), Expect = 4.3
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +3
Query: 30 VVKCSVCIVKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLVTDVQ 209
V+ C C+V V + N + P E I +G P+ K +VGG VTDV
Sbjct: 1044 VIYCLRCLVNVDIPL----NQGCLAPVEIRIPAGSFLSPSEKAAVVGGNVLTSQRVTDVV 1099
Query: 210 RISLEVMTLNPMC 248
+ + + C
Sbjct: 1100 LTAFQACACSQGC 1112
>At1g55350.4 68414.m06326 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 509 AIVIRAPALAYKPRMVPVFVHLFYCKSSENSS 414
A+++ P + Y PR++PV+V+ + +N S
Sbjct: 1017 AVLLSPPIVVYSPRVLPVYVYDAHADCGKNVS 1048
>At1g55350.3 68414.m06325 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 509 AIVIRAPALAYKPRMVPVFVHLFYCKSSENSS 414
A+++ P + Y PR++PV+V+ + +N S
Sbjct: 1017 AVLLSPPIVVYSPRVLPVYVYDAHADCGKNVS 1048
>At1g55350.2 68414.m06324 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 509 AIVIRAPALAYKPRMVPVFVHLFYCKSSENSS 414
A+++ P + Y PR++PV+V+ + +N S
Sbjct: 1017 AVLLSPPIVVYSPRVLPVYVYDAHADCGKNVS 1048
>At1g55350.1 68414.m06323 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -2
Query: 509 AIVIRAPALAYKPRMVPVFVHLFYCKSSENSS 414
A+++ P + Y PR++PV+V+ + +N S
Sbjct: 1017 AVLLSPPIVVYSPRVLPVYVYDAHADCGKNVS 1048
>At5g58880.1 68418.m07377 hypothetical protein
Length = 1088
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -2
Query: 431 SSENSSQMTLQRLQDSHLNLFDGLAQELLAGSCEKFVFVHDLALGDS 291
++ENSS + L ++QDSH + D + ++ EK + D G+S
Sbjct: 832 NAENSSDVILLQVQDSHKSPLDESVDQEISKEVEKTELLKDFC-GES 877
>At5g01920.1 68418.m00111 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 495
Score = 27.1 bits (57), Expect = 7.5
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 142 PKQPPETISASLGPTVWML 86
P PPE I+A L P +W L
Sbjct: 363 PSPPPEPIAALLSPILWQL 381
>At3g46980.2 68416.m05102 transporter-related low similarity to
brain specific Na+-dependent inorganic phosphate
cotransporter from [Rattus norvegicus] GI:507415, [Homo
sapiens] GI:7328925, vesicular glutamate transporter 3
from [Rattus norvegicus] GI:21685382; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 469
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 54 VKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLV 197
V + + GF++GN+ + + L+ GG +GP I G + W LV
Sbjct: 241 VGIAMAGFQLGNVVGLMLSPILMSQGGIYGPF---VIFGLSGFLWLLV 285
>At3g46980.1 68416.m05101 transporter-related low similarity to
brain specific Na+-dependent inorganic phosphate
cotransporter from [Rattus norvegicus] GI:507415, [Homo
sapiens] GI:7328925, vesicular glutamate transporter 3
from [Rattus norvegicus] GI:21685382; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 533
Score = 27.1 bits (57), Expect = 7.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +3
Query: 54 VKVTVKGFKMGNIHTVGPNEALIVSGGCFGPTTKRTIVGGWAWAWCLV 197
V + + GF++GN+ + + L+ GG +GP I G + W LV
Sbjct: 241 VGIAMAGFQLGNVVGLMLSPILMSQGGIYGPF---VIFGLSGFLWLLV 285
>At3g01760.1 68416.m00114 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter [Arabidopsis thaliana] GI:2576361; contains
Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 479
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +3
Query: 3 KLNKFVIV---LVVKCSVCIVKVTVKGFKMGNIH 95
KL ++IV L+V+ SVCIV + G + N+H
Sbjct: 135 KLGLYIIVPLQLLVEISVCIVYMVTGGKSLKNVH 168
>At5g61160.1 68418.m07673 transferase family protein similar to
anthocyanin 5-aromatic acyltransferase from Gentiana
triflora GI:4185599, malonyl CoA:anthocyanin
5-O-glucoside-6'''-O-malonyltransferase from Perilla
frutescens GI:17980232, Salvia splendens GI:17980234;
contains Pfam profile PF02458 transferase family
Length = 452
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 215 YTLDVRNQTPGPCPSTYYGT 156
Y D RN+ P P TY+GT
Sbjct: 302 YAADFRNRLEPPVPVTYFGT 321
>At2g27940.1 68415.m03387 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 237
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -3
Query: 142 PKQPPETISASLGPTVWMLPILNPFTVTFTIHTLHF 35
P QPP + +++ T+++L + F F+++ HF
Sbjct: 39 PPQPPSALDSTMALTIFILLVALFFMGFFSVYFRHF 74
>At2g17120.1 68415.m01976 peptidoglycan-binding LysM
domain-containing protein contains Pfam profile PF01476:
LysM domain; supporting cDNA
gi|16226688|gb|AF428464.1|AF428464
Length = 350
Score = 26.6 bits (56), Expect = 9.9
Identities = 18/82 (21%), Positives = 34/82 (41%)
Frame = -3
Query: 472 REWSLSLYTSSTVRVPRIARK*PSNVCRTVILISLTVLPRNCSQAVVRSSSSFMILHWAT 293
+ W+LS +SS ++ P + C +L + PR+C A + + F A
Sbjct: 257 KNWTLSCQSSSEIKPSNWQTCPPFSQCDGALLNASCRQPRDCVYAGYSNQTIFTTASPAC 316
Query: 292 PVTVSGTPWAVSTYSHIGFNVI 227
P + +A + S F ++
Sbjct: 317 PDSAGPDNYASTLSSSFNFVIV 338
>At1g24706.1 68414.m03104 expressed protein
Length = 1781
Score = 26.6 bits (56), Expect = 9.9
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +2
Query: 206 PTYIP*SDDIEPDVRVR*NGPRSAAHGDRSRPV-QDHERRRTSHNCLRAVPGQDRQRD*D 382
P IP S + D+ R G R H R P ++ E+RR+ N +V R+RD D
Sbjct: 1585 PNIIPHSMAAKEDLERRAGGAR---HSQRLSPRHEEREKRRSEENLSVSVDDAKRRRDDD 1641
>At1g07670.1 68414.m00824 calcium-transporting ATPase 4, endoplasmic
reticulum-type (ECA4) identical to SP|Q9XES1
Calcium-transporting ATPase 4, endoplasmic
reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
contains InterPro Accession IPR006069: Cation
transporting ATPase
Length = 775
Score = 26.6 bits (56), Expect = 9.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 320 FVHDLALGDSGHRERHSLGRFNVLAHRVQCHHFKGY 213
+ H+ +G ++ HSL ++ LAH QC ++G+
Sbjct: 599 YTHNSFMGIDLSQDGHSLVSYSQLAHWGQCSSWEGF 634
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,390,402
Number of Sequences: 28952
Number of extensions: 275736
Number of successful extensions: 783
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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