Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306G06f
(504 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P07742 Cluster: Ribonucleoside-diphosphate reductase la... 180 1e-44
UniRef50_P23921 Cluster: Ribonucleoside-diphosphate reductase la... 180 1e-44
UniRef50_Q9SJ20 Cluster: Ribonucleoside-diphosphate reductase la... 145 4e-34
UniRef50_Q4S8W6 Cluster: Ribonucleoside-diphosphate reductase; n... 138 5e-32
UniRef50_A2XAQ8 Cluster: Ribonucleoside-diphosphate reductase; n... 131 8e-30
UniRef50_Q01H73 Cluster: Ribonucleoside-diphosphate reductase; n... 126 2e-28
UniRef50_A7IY07 Cluster: Putative uncharacterized protein B832R;... 87 2e-16
UniRef50_O41111 Cluster: Ribonucleoside-diphosphate reductase; n... 85 9e-16
UniRef50_Q8JKL8 Cluster: Ribonucleoside-diphosphate reductase; n... 82 6e-15
UniRef50_A7PKX3 Cluster: Chromosome chr7 scaffold_20, whole geno... 81 1e-14
UniRef50_Q6MLM3 Cluster: Ribonucleoside-diphosphate reductase al... 75 7e-13
UniRef50_Q9QAL9 Cluster: Ribonucleoside-diphosphate reductase; n... 63 3e-09
UniRef50_O66503 Cluster: Ribonucleoside-diphosphate reductase su... 61 1e-08
UniRef50_P37426 Cluster: Ribonucleoside-diphosphate reductase 1 ... 51 1e-05
UniRef50_Q75BW6 Cluster: Ribonucleoside-diphosphate reductase; n... 49 5e-05
UniRef50_Q7T6Y8 Cluster: Ribonucleoside-diphosphate reductase la... 47 3e-04
UniRef50_O12935 Cluster: Ribonucleoside-diphosphate reductase; n... 46 4e-04
UniRef50_O55566 Cluster: P12; n=1; Leucania separata nuclear pol... 44 0.003
UniRef50_Q6A5Y5 Cluster: Ribonucleoside-diphosphate reductase al... 43 0.005
UniRef50_P74240 Cluster: Ribonucleoside-diphosphate reductase su... 40 0.024
UniRef50_Q4J4L6 Cluster: Ribonucleoside-diphosphate reductase; n... 38 0.097
UniRef50_Q4C9K9 Cluster: Ribonucleoside-diphosphate reductase; n... 36 0.39
UniRef50_A6PPR9 Cluster: Putative uncharacterized protein precur... 36 0.39
UniRef50_A3GHD2 Cluster: Aminophospholipid translocase and ATPas... 34 1.6
UniRef50_Q1IXL0 Cluster: Type II and III secretion system protei... 34 2.1
UniRef50_Q38803 Cluster: Metallothionein-like protein 1B; n=5; B... 34 2.1
UniRef50_Q6QGK6 Cluster: Putative uncharacterized protein; n=2; ... 33 3.7
UniRef50_A5KLT9 Cluster: Putative uncharacterized protein; n=1; ... 33 4.8
UniRef50_A1AN21 Cluster: Transcriptional regulator, XRE family; ... 33 4.8
UniRef50_Q4XDS3 Cluster: Putative uncharacterized protein; n=6; ... 33 4.8
UniRef50_A4VCY2 Cluster: Putative uncharacterized protein; n=1; ... 33 4.8
UniRef50_Q39JT6 Cluster: Ribonucleoside-diphosphate reductase; n... 32 6.4
UniRef50_Q8IBA9 Cluster: Putative uncharacterized protein PF08_0... 32 6.4
UniRef50_Q58242 Cluster: Uncharacterized protein MJ0832 [Contain... 32 8.5
UniRef50_P26685 Cluster: Ribonucleoside-diphosphate reductase la... 32 8.5
>UniRef50_P07742 Cluster: Ribonucleoside-diphosphate reductase large
subunit; n=93; root|Rep: Ribonucleoside-diphosphate
reductase large subunit - Mus musculus (Mouse)
Length = 792
Score = 180 bits (439), Expect = 1e-44
Identities = 82/108 (75%), Positives = 96/108 (88%)
Frame = +2
Query: 173 LYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVELDNLA 352
++V+KR GR E V DKITSRI+KLCYGLNMDFVDP IT+KVI G+YSGVTTVELD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 353 AETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVNPH 496
AETAAT+TT HPDYA+LAAR+A+SNLHKETKK FSDVM+DL++ +NPH
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPH 108
>UniRef50_P23921 Cluster: Ribonucleoside-diphosphate reductase large
subunit; n=110; root|Rep: Ribonucleoside-diphosphate
reductase large subunit - Homo sapiens (Human)
Length = 792
Score = 180 bits (439), Expect = 1e-44
Identities = 82/108 (75%), Positives = 96/108 (88%)
Frame = +2
Query: 173 LYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVELDNLA 352
++V+KR GR E V DKITSRI+KLCYGLNMDFVDP IT+KVI G+YSGVTTVELD LA
Sbjct: 1 MHVIKRDGRQERVMFDKITSRIQKLCYGLNMDFVDPAQITMKVIQGLYSGVTTVELDTLA 60
Query: 353 AETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVNPH 496
AETAAT+TT HPDYA+LAAR+A+SNLHKETKK FSDVM+DL++ +NPH
Sbjct: 61 AETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDVMEDLYNYINPH 108
>UniRef50_Q9SJ20 Cluster: Ribonucleoside-diphosphate reductase large
subunit; n=17; cellular organisms|Rep:
Ribonucleoside-diphosphate reductase large subunit -
Arabidopsis thaliana (Mouse-ear cress)
Length = 816
Score = 145 bits (352), Expect = 4e-34
Identities = 68/106 (64%), Positives = 82/106 (77%)
Frame = +2
Query: 173 LYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVELDNLA 352
+YV+KR GR E VH DKIT+R+KKL YGL+ D DPV + KV G+Y GVTT +LD LA
Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60
Query: 353 AETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVN 490
AETAA MT +HPDYA LAAR+A+SNLHK TKK FS+ +KD+F VN
Sbjct: 61 AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMFYHVN 106
>UniRef50_Q4S8W6 Cluster: Ribonucleoside-diphosphate reductase; n=3;
Tetraodontidae|Rep: Ribonucleoside-diphosphate reductase
- Tetraodon nigroviridis (Green puffer)
Length = 898
Score = 138 bits (335), Expect = 5e-32
Identities = 77/130 (59%), Positives = 89/130 (68%), Gaps = 30/130 (23%)
Frame = +2
Query: 194 GRMEEVHIDKITSRIKKLCYGLNMDFVD---------------PVC-------------- 286
GR E V DKITSR++KLCYGLN +FVD P+C
Sbjct: 2 GRQEAVSFDKITSRVQKLCYGLNSEFVDPVSTNRQCGPVGQTGPLCVLVPVTRLLWLCQA 61
Query: 287 -ITLKVINGMYSGVTTVELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDV 463
ITLKVI G+YSGVTT ELD LAAETAAT+TT HPDYA+LAAR+A+SNLHKETKK FSDV
Sbjct: 62 QITLKVIQGLYSGVTTAELDTLAAETAATLTTKHPDYAILAARIAVSNLHKETKKVFSDV 121
Query: 464 MKDLFDIVNP 493
M+DL++ VNP
Sbjct: 122 MEDLYNYVNP 131
>UniRef50_A2XAQ8 Cluster: Ribonucleoside-diphosphate reductase; n=4;
Oryza sativa|Rep: Ribonucleoside-diphosphate reductase -
Oryza sativa subsp. indica (Rice)
Length = 676
Score = 131 bits (317), Expect = 8e-30
Identities = 61/102 (59%), Positives = 76/102 (74%)
Frame = +2
Query: 173 LYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVELDNLA 352
+YV+KR GR E VH DKIT+R+K+L YGL+ + DPV + KV G+Y GVTT +L LA
Sbjct: 1 MYVVKRDGRQEAVHFDKITARLKRLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLGELA 60
Query: 353 AETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLF 478
AETAA MT HPDYA LAAR+AISNLHK T K FS+ +K ++
Sbjct: 61 AETAAAMTASHPDYASLAARIAISNLHKTTMKSFSETIKVMY 102
>UniRef50_Q01H73 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Ostreococcus tauri|Rep: Ribonucleoside-diphosphate
reductase - Ostreococcus tauri
Length = 840
Score = 126 bits (305), Expect = 2e-28
Identities = 67/123 (54%), Positives = 85/123 (69%), Gaps = 14/123 (11%)
Frame = +2
Query: 164 MNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPV--------------CITLKV 301
M LYV+KR GR E V DKIT+RIKKL YGL+ +F DPV + KV
Sbjct: 1 MGGLYVVKRDGREEPVAFDKITARIKKLAYGLSQEFCDPVRTDHGRLHLPHSQVIVAQKV 60
Query: 302 INGMYSGVTTVELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFD 481
G+++GVTT ELD LAAETAA+MT+ HPDYA+LAAR+++SNLHK T K FS+ MK +++
Sbjct: 61 CMGVFAGVTTKELDELAAETAASMTSKHPDYALLAARISVSNLHKTTVKSFSETMKVMYE 120
Query: 482 IVN 490
VN
Sbjct: 121 HVN 123
>UniRef50_A7IY07 Cluster: Putative uncharacterized protein B832R;
n=1; Paramecium bursaria Chlorella virus NY2A|Rep:
Putative uncharacterized protein B832R - Paramecium
bursaria Chlorella virus NY2A (PBCV-NY2A)
Length = 1103
Score = 87.0 bits (206), Expect = 2e-16
Identities = 49/127 (38%), Positives = 75/127 (59%), Gaps = 14/127 (11%)
Frame = +2
Query: 152 MVGK-MNKLYV-LKRGGRMEEVHIDKITSRIKKLCYGLNMD------------FVDPVCI 289
MVG+ MN+L V LKR G E + DKI RI++LC+ +N VD I
Sbjct: 1 MVGRPMNRLMVVLKRDGSKENISFDKILQRIQRLCWPINSKPVYKGSRAMTGLSVDVSKI 60
Query: 290 TLKVINGMYSGVTTVELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMK 469
V + G++TV+LD L A+ +A+MTT+HPDY +LAAR+++SNL K+T +D
Sbjct: 61 VASVCASIVDGISTVQLDELTADKSASMTTEHPDYGILAARISVSNLQKQTHDKITDAYA 120
Query: 470 DLFDIVN 490
++ +++
Sbjct: 121 EIAHLLS 127
>UniRef50_O41111 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Chlorovirus|Rep: Ribonucleoside-diphosphate reductase -
Paramecium bursaria Chlorella virus 1 (PBCV-1)
Length = 771
Score = 85.0 bits (201), Expect = 9e-16
Identities = 46/122 (37%), Positives = 71/122 (58%), Gaps = 13/122 (10%)
Frame = +2
Query: 164 MNK-LYVLKRGGRMEEVHIDKITSRIKKLCYGLNMD------------FVDPVCITLKVI 304
MN+ + VLKR G E + DKI RI++LC+ +N VD I V
Sbjct: 10 MNRTMVVLKRDGSKENISFDKILQRIQRLCWPVNSKPVYKGSRAMTGLNVDVSKIVASVC 69
Query: 305 NGMYSGVTTVELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDI 484
+ G++TV+LD L A+ +A+MTT+HPDY +LAAR+++SNL K+T +D ++ +
Sbjct: 70 ASIVDGISTVQLDELTADKSASMTTEHPDYGILAARISVSNLQKQTHDKITDAYAEIAHL 129
Query: 485 VN 490
+N
Sbjct: 130 LN 131
>UniRef50_Q8JKL8 Cluster: Ribonucleoside-diphosphate reductase; n=1;
Heliothis zea virus 1|Rep: Ribonucleoside-diphosphate
reductase - Heliothis zea virus 1
Length = 939
Score = 82.2 bits (194), Expect = 6e-15
Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 4/109 (3%)
Frame = +2
Query: 167 NKLYVLKRGGRMEEVHIDKITSRIKKLCY----GLNMDFVDPVCITLKVINGMYSGVTTV 334
N ++KR G +E K+ +RI++ L F++ I V G+Y V+T+
Sbjct: 4 NPRMIVKRNGSVERFDPSKLYARIERCMTMSEPRLTTAFINIAGIVADVEKGLYDRVSTL 63
Query: 335 ELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFD 481
ELD L +ET A+M+T HPD+++LAAR+A+ LHK T+ FS+ ++DL++
Sbjct: 64 ELDTLLSETCASMSTAHPDHSILAARIAMQALHKRTRSKFSETIRDLYE 112
>UniRef50_A7PKX3 Cluster: Chromosome chr7 scaffold_20, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr7 scaffold_20, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 208
Score = 81.4 bits (192), Expect = 1e-14
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 1/95 (1%)
Frame = +2
Query: 209 VHIDKITSRIKKLCYGLNMDFVDPVCITLKVING-MYSGVTTVELDNLAAETAATMTTDH 385
V DKIT+R+K L YGL +D D V + +VI +Y VTT LD LA MT +H
Sbjct: 6 VLFDKITTRLKNLSYGLCIDHCDLVLVARRVIMAEVYEHVTTSHLDELAT----AMTANH 61
Query: 386 PDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVN 490
P+ A LA R+ +SNLHK TKK FS+ +KD+ + N
Sbjct: 62 PNCASLAERIVVSNLHKNTKKSFSETIKDMHNHFN 96
>UniRef50_Q6MLM3 Cluster: Ribonucleoside-diphosphate reductase alpha
chain; n=14; Bacteria|Rep: Ribonucleoside-diphosphate
reductase alpha chain - Bdellovibrio bacteriovorus
Length = 801
Score = 75.4 bits (177), Expect = 7e-13
Identities = 37/89 (41%), Positives = 55/89 (61%)
Frame = +2
Query: 179 VLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVELDNLAAE 358
V KR G +E V + KI R+ K C GL VDP+ + K I+G+Y G +T ELDNL +
Sbjct: 11 VKKRDGTLEPVDVTKIVERVTKNCQGLTQ--VDPLRVATKAISGLYDGASTKELDNLCIQ 68
Query: 359 TAATMTTDHPDYAVLAARLAISNLHKETK 445
TA+ + + P+Y+ LAARL + + +E +
Sbjct: 69 TASLLIGEDPEYSRLAARLLSTYIDEEVR 97
>UniRef50_Q9QAL9 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Shrimp white spot syndrome virus|Rep:
Ribonucleoside-diphosphate reductase - White spot
syndrome virus (WSSV)
Length = 848
Score = 63.3 bits (147), Expect = 3e-09
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 9/125 (7%)
Frame = +2
Query: 152 MVGKMNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNM-------DFVDPVCITLKVING 310
M + ++ KR G +E+ ++KI RI+ C +N + ++P + +++
Sbjct: 1 MGSNQQQSFISKRNGTKQEISLEKIIKRIENACLPVNQYVPKLDKNAINPQELASHIMDR 60
Query: 311 MYSGVTTVELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKK--HFSDVMKDLFDI 484
+ + ++ E+D+ A+ A T DHPD+ LA R SN+HK TK+ FS + L
Sbjct: 61 LPATISFQEMDDFLADYAKTKIVDHPDFGKLAGRFICSNIHKNTKEWNSFSATTQKLRHA 120
Query: 485 VNPHT 499
++P T
Sbjct: 121 IHPGT 125
>UniRef50_O66503 Cluster: Ribonucleoside-diphosphate reductase
subunit alpha; n=1; Aquifex aeolicus|Rep:
Ribonucleoside-diphosphate reductase subunit alpha -
Aquifex aeolicus
Length = 801
Score = 61.3 bits (142), Expect = 1e-08
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +2
Query: 173 LYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVELDNLA 352
+YV+KR GR E++ I+KI IK C GLN VDP+ + G+TT E+ L
Sbjct: 3 MYVIKRSGRKEKLDINKIRIAIKFACEGLN---VDPLELEADAQIQFRDGITTKEIQQLL 59
Query: 353 AETAA-TMTTDHPDYAVLAARLAISNLHKE 439
+TAA ++ + PD+ AARL + +L+K+
Sbjct: 60 IKTAAEKVSAERPDWTYTAARLLLYDLYKD 89
>UniRef50_P37426 Cluster: Ribonucleoside-diphosphate reductase 1
subunit alpha; n=194; root|Rep:
Ribonucleoside-diphosphate reductase 1 subunit alpha -
Salmonella typhimurium
Length = 761
Score = 51.2 bits (117), Expect = 1e-05
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 2/99 (2%)
Frame = +2
Query: 164 MNK-LYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVEL 340
MN+ L V KR GR E +++DKI + GLN V V + + Y G+ T ++
Sbjct: 1 MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELRSHI--QFYDGIKTSDI 58
Query: 341 DNLAAETAATMTT-DHPDYAVLAARLAISNLHKETKKHF 454
+ AA + + D PDY LAARLAI +L K+ F
Sbjct: 59 HETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQF 97
>UniRef50_Q75BW6 Cluster: Ribonucleoside-diphosphate reductase; n=4;
Saccharomycetaceae|Rep: Ribonucleoside-diphosphate
reductase - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 864
Score = 49.2 bits (112), Expect = 5e-05
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +2
Query: 170 KLYVLKRGGRMEEVHID-KITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVELDN 346
K++++ + E + K+ ++KL +GL ++ D ++ G+ + EL
Sbjct: 6 KIFIISDDSGLTEAFDERKLLESLRKLQFGLKINDADIDKAVKRIAAGIGGDIRDSELVA 65
Query: 347 LAAETAATMTTDHPDYAVLAARLAISNLHK 436
ET A+M T HPD+++LAAR+ I LHK
Sbjct: 66 YIGETLASMITRHPDFSLLAARVEIKVLHK 95
>UniRef50_Q7T6Y8 Cluster: Ribonucleoside-diphosphate reductase large
chain; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Ribonucleoside-diphosphate reductase large chain -
Mimivirus
Length = 881
Score = 46.8 bits (106), Expect = 3e-04
Identities = 25/100 (25%), Positives = 50/100 (50%)
Frame = +2
Query: 182 LKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVELDNLAAET 361
L G ++ + + I + ++K+ + + +D +T + + S T ++DN T
Sbjct: 72 LDHNGSIQVITSEIIRTYVEKIFEKMEVTHLDIDKMTKNIFPKLKSINTIKDIDNQIIST 131
Query: 362 AATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFD 481
A+ M TDH DY +A + ++NLH T F + + L++
Sbjct: 132 ASEMVTDHYDYPKIAVWILMTNLHDNTSDDFLETAEKLYN 171
>UniRef50_O12935 Cluster: Ribonucleoside-diphosphate reductase; n=2;
Nucleopolyhedrovirus|Rep: Ribonucleoside-diphosphate
reductase - Spodoptera exigua MNPV
Length = 770
Score = 46.4 bits (105), Expect = 4e-04
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Frame = +2
Query: 218 DKITSRIKKLCYGLNMDFVDPVCITLKVINGMYS-GVTTVELDNLAAETAATMTTDHPDY 394
+ +T + LC ++ +VD + KV+ G ++L A+ AA+MT H DY
Sbjct: 23 ENLTLLLNSLCKNIDTRYVDVPKLVHKVVAESGDIGFDKIKL--YCADVAASMTYVHYDY 80
Query: 395 AVLAARLAISNLHKETKKHFSDVMKDLF 478
A+LA R+ + +LH + F + DLF
Sbjct: 81 ALLAGRILVEDLHSKVSSCFVTIANDLF 108
>UniRef50_O55566 Cluster: P12; n=1; Leucania separata nuclear
polyhedrosis virus|Rep: P12 - Leucania separata nuclear
polyhedrosis virus (LsNPV)
Length = 102
Score = 43.6 bits (98), Expect = 0.003
Identities = 18/36 (50%), Positives = 25/36 (69%)
Frame = +2
Query: 173 LYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDP 280
+YV+KR GR+E+V K+ RI +LC+ LN FV P
Sbjct: 1 MYVVKRDGRLEQVSSSKLYQRIHRLCHDLNSQFVHP 36
>UniRef50_Q6A5Y5 Cluster: Ribonucleoside-diphosphate reductase alpha
chain; n=6; Actinobacteria (class)|Rep:
Ribonucleoside-diphosphate reductase alpha chain -
Propionibacterium acnes
Length = 856
Score = 42.7 bits (96), Expect = 0.005
Identities = 27/107 (25%), Positives = 49/107 (45%)
Frame = +2
Query: 164 MNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVELD 343
++ + V KR G + +++ + I GL+ + +V ++ G+TT LD
Sbjct: 6 ISTIRVRKRDGSLAPYDGNEVAASIMDSARGLDDAVARATLLQAEVEITLFDGMTTDALD 65
Query: 344 NLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDI 484
+ A D P + +A+R+A+ L+KE F D DL D+
Sbjct: 66 EAVIQVALGNAKDDPAFDTIASRIAVKKLYKEV---FGDTHDDLGDV 109
>UniRef50_P74240 Cluster: Ribonucleoside-diphosphate reductase
subunit alpha; n=2; Chroococcales|Rep:
Ribonucleoside-diphosphate reductase subunit alpha -
Synechocystis sp. (strain PCC 6803)
Length = 767
Score = 40.3 bits (90), Expect = 0.024
Identities = 24/93 (25%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Frame = +2
Query: 167 NKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVEL-D 343
+++ V++R G ++I KI + + C GL V+ + + + + G++T E+ D
Sbjct: 29 HRIQVIRRDGSSTPLNIGKIRAVVDWACLGLE---VNSIALEAGLTTRLREGISTREIQD 85
Query: 344 NLAAETAATMTTDHPDYAVLAARLAISNLHKET 442
NL + + + PD+ +A RL + +L K+T
Sbjct: 86 NLISCALEMCSPNEPDWRYVAGRLHVWSLWKDT 118
>UniRef50_Q4J4L6 Cluster: Ribonucleoside-diphosphate reductase; n=3;
cellular organisms|Rep: Ribonucleoside-diphosphate
reductase - Azotobacter vinelandii AvOP
Length = 1338
Score = 38.3 bits (85), Expect = 0.097
Identities = 22/87 (25%), Positives = 41/87 (47%)
Frame = +2
Query: 179 VLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVELDNLAAE 358
V + G + + + ++ + I + C GL VD I + + +Y GV +++
Sbjct: 150 VARADGVLVPLDMGRLDTIIGEACEGLAE--VDAALIQKETLKNLYDGVAEKDVNTALVM 207
Query: 359 TAATMTTDHPDYAVLAARLAISNLHKE 439
TA T+ P+Y+ + ARL + L E
Sbjct: 208 TARTLVEREPNYSYVTARLLMDTLRAE 234
>UniRef50_Q4C9K9 Cluster: Ribonucleoside-diphosphate reductase; n=4;
Cyanobacteria|Rep: Ribonucleoside-diphosphate reductase
- Crocosphaera watsonii
Length = 1116
Score = 36.3 bits (80), Expect = 0.39
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +2
Query: 167 NKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVEL-D 343
+K+ V +R G ++I KI + + C V+ + + + + G+TT E+ D
Sbjct: 31 SKIRVRRRDGSWTALNIVKIRAVVDWACADRE---VNSIALEAGLTTRLRDGITTREIQD 87
Query: 344 NLAAETAATMTTDHPDYAVLAARLAISNLHKET 442
NL + D PD+ +A RL I +L K+T
Sbjct: 88 NLINCALEMCSPDEPDWRYIAGRLHIWSLWKDT 120
>UniRef50_A6PPR9 Cluster: Putative uncharacterized protein
precursor; n=1; Victivallis vadensis ATCC BAA-548|Rep:
Putative uncharacterized protein precursor - Victivallis
vadensis ATCC BAA-548
Length = 493
Score = 36.3 bits (80), Expect = 0.39
Identities = 21/65 (32%), Positives = 28/65 (43%)
Frame = +1
Query: 229 IKN*KTMLWIKYGFC*SGVYNTKSYQWNVLGSDNCGTG*SCCRDSCYNDYRSSRLCCSCS 408
++N + + GF G SY N L DNCG G SC R S + C+ S
Sbjct: 216 VRNFNCIFSVNDGFDADGSPQNSSYI-NCLAYDNCGQGFSCHRTSSMRYIGCGAIRCASS 274
Query: 409 QACNI 423
CN+
Sbjct: 275 NVCNV 279
>UniRef50_A3GHD2 Cluster: Aminophospholipid translocase and ATPase;
n=5; Saccharomycetales|Rep: Aminophospholipid translocase
and ATPase - Pichia stipitis (Yeast)
Length = 1513
Score = 34.3 bits (75), Expect = 1.6
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Frame = +2
Query: 260 NMDFVDPVCIT-LKVINGMYSGVTTV-ELDNLAAETAATMTTDHPDYAVLAARLAISNLH 433
N+++VD + L+ GM +G T E+D L AE + P+YAV+ A++++
Sbjct: 961 NVEYVDSLITRHLQENFGMLAGNDTPQEVDRLIAEAKKDHSAPSPNYAVVIDGAALNSVF 1020
Query: 434 KETKKHFSDVMKDL 475
K+ +H S+ ++ L
Sbjct: 1021 KDLSEHPSESVRKL 1034
>UniRef50_Q1IXL0 Cluster: Type II and III secretion system protein
precursor; n=1; Deinococcus geothermalis DSM 11300|Rep:
Type II and III secretion system protein precursor -
Deinococcus geothermalis (strain DSM 11300)
Length = 673
Score = 33.9 bits (74), Expect = 2.1
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
Frame = +2
Query: 182 LKRGGRMEEVHIDKITSRIKK-LCYGLNMDFVDPV-----CITLKV---INGMYSGVTTV 334
+K GGR+E ++I + I+K + YGLN+DF DP +TL+V +N + + T
Sbjct: 538 IKSGGRLE-INIPSSSGNIEKQIDYGLNLDFFDPQVAPDGTVTLRVRGQVNNIAGTLPTT 596
Query: 335 ELDNL 349
+ NL
Sbjct: 597 SVPNL 601
>UniRef50_Q38803 Cluster: Metallothionein-like protein 1B; n=5;
Brassicaceae|Rep: Metallothionein-like protein 1B -
Arabidopsis thaliana (Mouse-ear cress)
Length = 45
Score = 33.9 bits (74), Expect = 2.1
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +1
Query: 328 NCGTG*SC-CRDSCYNDYRSSRLC--CSCSQACN 420
NCG G SC C DSC + ++ C CSC CN
Sbjct: 11 NCGCGSSCKCGDSCSCEKNYNKECDNCSCGSNCN 44
>UniRef50_Q6QGK6 Cluster: Putative uncharacterized protein; n=2;
Enterobacteria phage T5|Rep: Putative uncharacterized
protein - Bacteriophage T5
Length = 144
Score = 33.1 bits (72), Expect = 3.7
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Frame = +2
Query: 164 MNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCIT-LKVINGMYSGVTTVEL 340
MN LYVL+ D ++ + G ++ +D C+T L N + S + +E
Sbjct: 3 MNMLYVLRELIEAARKSGDAVSVKHLSTVLG-DLQRIDKDCVTELGFTNWLKSQLKAIEN 61
Query: 341 DNLAAETAATMTTDHPDYAVLAARL----AISNL-HKETKKHFSDVMK 469
+AAE + T +Y L ARL A+ L E +K+F++++K
Sbjct: 62 TRIAAEKSNVDYTPDAEYLDLLARLEHDYALQQLTETEIRKYFAELVK 109
>UniRef50_A5KLT9 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus torques ATCC 27756|Rep: Putative
uncharacterized protein - Ruminococcus torques ATCC
27756
Length = 1611
Score = 32.7 bits (71), Expect = 4.8
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +2
Query: 281 VCITLKVINGMYSGVTTVELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSD 460
V +T K + GM TVE + T + TD DY ++ R+ + + + ++SD
Sbjct: 523 VTLTSKTVTGMEKATVTVESEG-EKTTVDVIVTDEKDYEIVDLRVGDTKTYTDKTGNYSD 581
Query: 461 VMKDLFD 481
D D
Sbjct: 582 STLDGLD 588
>UniRef50_A1AN21 Cluster: Transcriptional regulator, XRE family;
n=1; Pelobacter propionicus DSM 2379|Rep:
Transcriptional regulator, XRE family - Pelobacter
propionicus (strain DSM 2379)
Length = 189
Score = 32.7 bits (71), Expect = 4.8
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Frame = +2
Query: 149 KMVGKMNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVT 328
++V +NK + ++G + E+ + TS I + G+ +P TL+ Y GV+
Sbjct: 13 RLVEYINKA-IAEKGQKALEIEVGLSTSMISRYKRGIG----EPTASTLQKFAD-YFGVS 66
Query: 329 TVEL--DNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKD-LFDIVNPHT 499
EL D+ + E T+ ++ + I +++ ETKK + KD L DI++ T
Sbjct: 67 VWELRGDDFSLELNKMSTSYETSNGTISENIDIDSINGETKKTLLRLSKDLLLDILSRAT 126
>UniRef50_Q4XDS3 Cluster: Putative uncharacterized protein; n=6;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium chabaudi
Length = 330
Score = 32.7 bits (71), Expect = 4.8
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -1
Query: 312 IPLITFSVIHTGSTKSIFNP*HSFLILDVILSICTSSILPPLFKTYNLFIL 160
+PL SVIH T + + H FL + +LSIC + + +Y +F+L
Sbjct: 49 LPLFLISVIHLSITMNGYYIGHLFLTISYLLSICFFILY--FYNSYTIFVL 97
>UniRef50_A4VCY2 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 152
Score = 32.7 bits (71), Expect = 4.8
Identities = 15/42 (35%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +3
Query: 9 RYIERVKNSNSFNLMSVLSKSRYISSL*VCLD-*IAFILFSV 131
R IE++KN +S N++ ++ + +I S+ CL I+FI+F +
Sbjct: 59 RIIEKLKNKHSKNIIKIIGLTYFIKSINCCLSFIISFIVFQI 100
>UniRef50_Q39JT6 Cluster: Ribonucleoside-diphosphate reductase;
n=86; Bacteria|Rep: Ribonucleoside-diphosphate reductase
- Burkholderia sp. (strain 383) (Burkholderia cepacia
(strain ATCC 17760/ NCIB 9086 / R18194))
Length = 998
Score = 32.3 bits (70), Expect = 6.4
Identities = 18/82 (21%), Positives = 38/82 (46%)
Frame = +2
Query: 194 GRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVELDNLAAETAATM 373
G + ++ + + + C GL V+P I + + +Y GV ++ + A A TM
Sbjct: 162 GVTRPLDLNALRALVVSACDGLGAA-VNPDPIVAETVKNLYDGVPMSQVYDSAILAARTM 220
Query: 374 TTDHPDYAVLAARLAISNLHKE 439
P Y+ + +R+ + + +E
Sbjct: 221 IEKDPAYSQVTSRILLHTIRRE 242
>UniRef50_Q8IBA9 Cluster: Putative uncharacterized protein
PF08_0013; n=3; Plasmodium|Rep: Putative uncharacterized
protein PF08_0013 - Plasmodium falciparum (isolate 3D7)
Length = 943
Score = 32.3 bits (70), Expect = 6.4
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 289 NTKSYQWNVLGSDNCGTG*SCCRDSCYNDYRSSRLCCS---CSQAC 417
N + N S N SCC +SC ++ R S CCS C+ +C
Sbjct: 700 NNNNNNNNSSSSSNSCCSNSCCSNSCCSNSRCSNSCCSNSCCNNSC 745
>UniRef50_Q58242 Cluster: Uncharacterized protein MJ0832 [Contains:
Mja rnr-1 intein; Mja rnr-2 intein]; n=2;
Methanococcales|Rep: Uncharacterized protein MJ0832
[Contains: Mja rnr-1 intein; Mja rnr-2 intein] -
Methanococcus jannaschii
Length = 1750
Score = 31.9 bits (69), Expect = 8.5
Identities = 19/63 (30%), Positives = 37/63 (58%)
Frame = +2
Query: 161 KMNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVEL 340
K+ + YV+KR R E+ +++K+ + + G+N +D I +V +Y+G+TT EL
Sbjct: 10 KVMEFYVIKRDKRKEKFNVNKLAKSL--INSGVNYGDLDT--IISEVCAKVYNGITTDEL 65
Query: 341 DNL 349
++
Sbjct: 66 KDI 68
>UniRef50_P26685 Cluster: Ribonucleoside-diphosphate reductase large
chain; n=2; African swine fever virus|Rep:
Ribonucleoside-diphosphate reductase large chain -
African swine fever virus (isolate Malawi Lil 20/1)
(ASFV)
Length = 779
Score = 31.9 bits (69), Expect = 8.5
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = +2
Query: 302 INGMYSGVTTVELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFS 457
+N + + L L + +A +T H DY+ LAARL++ LH+ T FS
Sbjct: 23 LNKLLQALNHHSLQGLISYCSA-LTILHYDYSTLAARLSVYLLHQSTASSFS 73
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,877,822
Number of Sequences: 1657284
Number of extensions: 8770136
Number of successful extensions: 21027
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 20198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21011
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30110042232
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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