Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G06f
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...   160   1e-40
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   1.6  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   2.1  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    26   2.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   3.7  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    25   6.5  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   6.5  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   6.5  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   8.5  

>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score =  160 bits (388), Expect = 1e-40
 Identities = 74/109 (67%), Positives = 91/109 (83%)
 Frame = +2

Query: 173 LYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVELDNLA 352
           ++V KR GR E+V  DKIT+R+ +LCYGL+ D VDPV IT KVI+G+Y GVTT+ELDNLA
Sbjct: 1   MFVYKRDGRQEKVAFDKITARVSRLCYGLDSDHVDPVEITQKVISGVYPGVTTIELDNLA 60

Query: 353 AETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVNPHT 499
           AETAATMTT HPDYA+LAAR+A+SNLHK+T+K FS V++ L D VNP T
Sbjct: 61  AETAATMTTKHPDYAILAARIAVSNLHKQTEKVFSTVVQQLHDYVNPKT 109


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 272  QNPYLIHNIV-F*FLMLSCLYAPPPFF 195
            + PYLIHN+V   F  L  LYA   FF
Sbjct: 1090 EKPYLIHNVVGLYFFWLLFLYAKNGFF 1116


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 421 YCKPGCKNSIIWMIGSH 371
           +CKP  K ++ WM G+H
Sbjct: 679 HCKPNSKLNVFWMPGTH 695


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +2

Query: 341 DNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSD 460
           +N+ +++   M   +PD       +  +N+ KE ++ FSD
Sbjct: 7   ENIVSDSIVNMELTNPDNTTTMHPIYETNIEKEVQQEFSD 46


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +2

Query: 317 SGVTTVELDNLAAETAATMTTDHP---DYAVLAARLAISNLHK 436
           S V T+ L N+    A+ +TTDHP   +  +L   LA S+  K
Sbjct: 763 SDVATLCLTNMHKILASLLTTDHPNLEESVMLLLSLATSDFEK 805


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 332 VELDNLAAETAATMTTDHPDYAVLAA 409
           ++  +LA   A+  T DHP   VLAA
Sbjct: 586 IQWSSLARAAASRQTADHPRVLVLAA 611


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 380 DHPDYAVLAARLAISNLHKETKKHFSDVMKD 472
           DHPD+A+      +       K  FSD+++D
Sbjct: 420 DHPDFALKVVGAVVDYGWTFPKPKFSDILRD 450


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = -3

Query: 418 CKPGCKNSIIWMIGSHCSSCLCSKIIQFHSCHSRVHSIDNF*CY 287
           C   C +  +W I   C +  C +   +H  H++ H +D   CY
Sbjct: 262 CTVCCYDKDLW-ICLICGNIGCGR---YHDAHAKQHYVDTAHCY 301


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 241 KTMLWIKYGFC*SGVYNTKSYQWNVLGSDN 330
           K+  W    F    +YNT++   N+LG DN
Sbjct: 137 KSQRWRHSSFAQYYLYNTETKDVNMLGQDN 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,783
Number of Sequences: 5004
Number of extensions: 40132
Number of successful extensions: 96
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)