Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306G06f
(504 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1133 + 34346894-34347121,34347222-34347283,34347373-343474... 131 3e-31
06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,344... 105 3e-23
01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229 31 0.69
07_03_1382 - 26170563-26170631,26171151-26171843 29 2.8
04_04_0163 - 23217212-23217396,23217503-23217569,23217678-23217743 29 2.8
03_06_0484 + 34233042-34233258,34235317-34237049 29 2.8
05_03_0245 + 10890555-10890962 28 3.7
05_03_0244 + 10857139-10857516 28 3.7
05_05_0109 - 22454539-22456268,22457069-22457279 28 4.9
03_02_0540 + 9340379-9340592,9341250-9342988 28 4.9
11_08_0075 + 28173220-28173433,28175348-28177083 27 8.6
07_03_1380 - 26163993-26164076,26164769-26165365 27 8.6
06_01_0626 + 4549661-4550947 27 8.6
04_04_1399 - 33249210-33249359,33249521-33249597,33249735-332498... 27 8.6
>02_05_1133 +
34346894-34347121,34347222-34347283,34347373-34347460,
34348005-34348268,34348346-34348586,34348672-34348748,
34348837-34349007,34349084-34349176,34349257-34349406,
34349491-34349577,34349656-34349820,34349900-34350019,
34350244-34350446,34350547-34350696,34350779-34350926,
34351046-34351129,34351207-34351308
Length = 810
Score = 131 bits (317), Expect = 3e-31
Identities = 61/102 (59%), Positives = 76/102 (74%)
Frame = +2
Query: 173 LYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVELDNLA 352
+YV+KR GR E VH DKIT+R+K+L YGL+ + DPV + KV G+Y GVTT +L LA
Sbjct: 1 MYVVKRDGRQEAVHFDKITARLKRLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLGELA 60
Query: 353 AETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLF 478
AETAA MT HPDYA LAAR+AISNLHK T K FS+ +K ++
Sbjct: 61 AETAAAMTASHPDYASLAARIAISNLHKTTMKSFSETIKVMY 102
>06_01_0485 -
3444240-3444398,3444507-3444572,3444644-3444724,
3444823-3444900,3444980-3445075,3445363-3445405,
3445498-3445571,3445693-3445781,3445887-3445935,
3446171-3446227,3446309-3446425,3448633-3448698,
3449140-3449196,3449271-3449363,3449515-3449662,
3449753-3449902,3449979-3450181,3450319-3450438,
3450530-3450694,3450784-3450870,3450951-3451100,
3451225-3451365,3451399-3451569,3452015-3452091,
3452175-3452415,3452495-3452758,3452913-3453000,
3453099-3453481
Length = 1170
Score = 105 bits (251), Expect = 3e-23
Identities = 48/79 (60%), Positives = 58/79 (73%)
Frame = +2
Query: 173 LYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVELDNLA 352
+YV+KR GR E VH DKIT+R+KKL YGL+ + DPV + KV G+Y GVTT +LD LA
Sbjct: 1 MYVVKRDGRQETVHFDKITARLKKLSYGLSQEHCDPVLVAQKVCAGVYKGVTTSQLDELA 60
Query: 353 AETAATMTTDHPDYAVLAA 409
AETAA MT HPDYA + A
Sbjct: 61 AETAAAMTASHPDYASVTA 79
>01_06_1291 + 36032088-36032299,36032737-36033314,36034494-36036229
Length = 841
Score = 30.7 bits (66), Expect = 0.69
Identities = 29/115 (25%), Positives = 49/115 (42%)
Frame = +2
Query: 149 KMVGKMNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVT 328
K G+ NK+ + GR+ + I+K+ +K + + V + N Y+
Sbjct: 691 KTTGQKNKITITNDKGRLSKEEIEKMVQEAEKY-KAEDEEHKKKVDAKNALENYAYNMRN 749
Query: 329 TVELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVNP 493
T++ D +A++ +A D A SN E + F D MK+L I NP
Sbjct: 750 TIKDDKIASKLSADDKKKIEDAIDGAINWLDSNQLAEADE-FEDKMKELESICNP 803
>07_03_1382 - 26170563-26170631,26171151-26171843
Length = 253
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 295 KSYQWNVLGSDNCGTG*SCCRDSCY-NDYRSSRLCCSCSQACNI 423
++ +W +G CG G C + + ++++RLCC C C +
Sbjct: 73 ETLEWAAIGP--CGHGEVCAGCALHIRVFQNNRLCCICRSPCRV 114
>04_04_0163 - 23217212-23217396,23217503-23217569,23217678-23217743
Length = 105
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 319 GSDNCGTG*SCCRDSCYNDYRSSRLCCSCSQACNIKL--T*RNKKTLFRCYERFV*H 483
G D G + C + + R SR C +C AC T N++T RCY +V H
Sbjct: 43 GKDCVGACDARCSEHSHKK-RCSRSCLTCCSACRCVPAGTAGNRETCGRCYTDWVSH 98
>03_06_0484 + 34233042-34233258,34235317-34237049
Length = 649
Score = 28.7 bits (61), Expect = 2.8
Identities = 27/115 (23%), Positives = 49/115 (42%)
Frame = +2
Query: 149 KMVGKMNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVT 328
K G+ NK+ + GR+ + I+K+ +K + + V + N Y+
Sbjct: 500 KTTGQKNKITITNDKGRLSKEEIEKMVQDAEKY-KSEDEEHKKKVDAKNSLENYAYNMRN 558
Query: 329 TVELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVNP 493
T++ + +A++ A D AV A + N + F D MK+L + NP
Sbjct: 559 TIQDEKIASKLPADDKKKIED-AVEQAIQWLDNNQLAEVEEFEDKMKELEGLCNP 612
>05_03_0245 + 10890555-10890962
Length = 135
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 331 CGTG*SCCRDSCYNDYRSSRLCCSCSQACNIKLT 432
C G SCC C + C SCS C+ K T
Sbjct: 94 CKHGRSCCGGRCVDLLSDRDNCGSCSNQCSNKCT 127
>05_03_0244 + 10857139-10857516
Length = 125
Score = 28.3 bits (60), Expect = 3.7
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +1
Query: 331 CGTG*SCCRDSCYNDYRSSRLCCSCSQACNIKLT 432
C G SCC C + C SCS C+ K T
Sbjct: 85 CKHGRSCCGGRCVDLLSDRDNCGSCSNQCSNKCT 118
>05_05_0109 - 22454539-22456268,22457069-22457279
Length = 646
Score = 27.9 bits (59), Expect = 4.9
Identities = 27/115 (23%), Positives = 48/115 (41%)
Frame = +2
Query: 149 KMVGKMNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVT 328
K G+ NK+ + GR+ + I+K+ +K + + V + N Y+
Sbjct: 498 KTTGQKNKITITNDKGRLSKEEIEKMVQEAEKY-KAEDEEHKKKVDAKNALENYAYNMRN 556
Query: 329 TVELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVNP 493
T++ + +A++ AA D A+ A + F D MK+L I NP
Sbjct: 557 TIKDEKIASKLAADDKKRIED-AIDGAISWLDTNQLAEADEFEDKMKELEGICNP 610
>03_02_0540 + 9340379-9340592,9341250-9342988
Length = 650
Score = 27.9 bits (59), Expect = 4.9
Identities = 27/115 (23%), Positives = 48/115 (41%)
Frame = +2
Query: 149 KMVGKMNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVT 328
K G+ NK+ + GR+ + I+K+ +K + + V + N Y+
Sbjct: 499 KTTGQKNKITITNDKGRLSKEDIEKMVQEAEKY-KAEDEEHKKKVDAKNSLENYAYNMRN 557
Query: 329 TVELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVNP 493
T++ D +A++ D A SN E ++ F D MK+L + NP
Sbjct: 558 TIKDDKIASKLPEADKKKIEDAIDGAISWLDSNQLAEAEE-FEDKMKELEGVCNP 611
>11_08_0075 + 28173220-28173433,28175348-28177083
Length = 649
Score = 27.1 bits (57), Expect = 8.6
Identities = 27/115 (23%), Positives = 48/115 (41%)
Frame = +2
Query: 149 KMVGKMNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVT 328
K G+ NK+ + GR+ + I+K+ +K + + V + N Y+
Sbjct: 499 KTTGQKNKITITNDKGRLSKEEIEKMVQEAEKY-KSEDEEHKKKVESKNALENYAYNMRN 557
Query: 329 TVELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVNP 493
T++ + +A++ A D A + N E + F D MK+L I NP
Sbjct: 558 TIKDEKIASKLPAADKKKIEDAIDQAIQWLDGNQLAEADE-FDDKMKELEGICNP 611
>07_03_1380 - 26163993-26164076,26164769-26165365
Length = 226
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +1
Query: 292 TKSYQWNVLGSDNCGTG*SCCRDSC-YNDYRSSRLCCSCSQACNI 423
T+ +W +G CG G C S ++++R CC C C +
Sbjct: 41 TEPLEWAAIGP--CGHGDVCAGCSLRIRVFQNNRRCCICRAPCRV 83
>06_01_0626 + 4549661-4550947
Length = 428
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 325 DNCGTG*SCCRDSCYNDYRSS 387
D GTG + C DSC N Y S+
Sbjct: 380 DGNGTGNASCNDSCNNPYGSN 400
>04_04_1399 -
33249210-33249359,33249521-33249597,33249735-33249814,
33249904-33250094,33250183-33250469,33250595-33250721,
33250878-33250994,33251085-33251198,33251510-33251671,
33252909-33252974,33253098-33253269,33253377-33253584,
33253728-33253776,33254132-33254305
Length = 657
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -1
Query: 276 STKSIFNP*HSFLILDVILSICTSSILPPLFKTYNLFILPTILVFYNSRR 127
+TK + + F ILD +S + LPP+ Y+ F+ P + S R
Sbjct: 42 TTKWVMAVQYLFPILDWGISYAKLASLPPIIGLYSSFVPPMVYAVLGSSR 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,182,392
Number of Sequences: 37544
Number of extensions: 236351
Number of successful extensions: 478
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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