Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G06f
         (504 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44519| Best HMM Match : Ribonuc_red_lgC (HMM E-Value=0)            149   1e-36
SB_44049| Best HMM Match : EGF_CA (HMM E-Value=5.3e-06)                29   2.9  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_56809| Best HMM Match : DEAD (HMM E-Value=2.6e-19)                  28   5.0  
SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)               27   6.6  
SB_42263| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_51338| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_25801| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_44519| Best HMM Match : Ribonuc_red_lgC (HMM E-Value=0)
          Length = 783

 Score =  149 bits (361), Expect = 1e-36
 Identities = 68/100 (68%), Positives = 84/100 (84%)
 Frame = +2

Query: 194 GRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVELDNLAAETAATM 373
           G  E V++DKITSRI KLCYGL  +FV P+ IT+KVI+G+Y GV T ELD LAAETAA+M
Sbjct: 2   GDSERVYLDKITSRISKLCYGLKNEFVKPINITMKVISGIYQGVKTTELDTLAAETAASM 61

Query: 374 TTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVNP 493
           TT HPDYA+LAAR+ +SNLHKETKK FS+VM++L++ VNP
Sbjct: 62  TTKHPDYAILAARIEVSNLHKETKKVFSEVMEELYNYVNP 101


>SB_44049| Best HMM Match : EGF_CA (HMM E-Value=5.3e-06)
          Length = 41

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 325 DNCGTG*SCCRDSCYNDYRSSRLCC 399
           D C TG +CC   C N + S R  C
Sbjct: 3   DECLTGVACCEHKCQNTHGSYRCGC 27


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 325 DNCGTG*SCCRDSCYNDYRSSRLCCSC 405
           D C TG + C D+C N Y   +  C C
Sbjct: 397 DECSTGANVCNDNCVNLY--GKYTCQC 421


>SB_56809| Best HMM Match : DEAD (HMM E-Value=2.6e-19)
          Length = 1463

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 161 KMNKLYVLKRGGRMEEVHIDKITSRIKKL 247
           K+  +YVL RG R+E   +  I+ R+K++
Sbjct: 97  KVETVYVLARGQRIENKRLKNISERLKEI 125


>SB_47759| Best HMM Match : ASC (HMM E-Value=1.49939e-42)
          Length = 464

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 329 TVELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFS 457
           TV   N+  +    +   HPDY  L   L I N  KE ++ F+
Sbjct: 92  TVCPTNIFMKRKLHLPDSHPDYEKLGLNLTICNETKELRRRFN 134


>SB_42263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 179 VLKRGGRMEEVHIDKITSRIKKLCYGL 259
           V + GG+ ++  + +IT R++K CYG+
Sbjct: 52  VNQHGGQKKKGDLPQITKRLEKRCYGV 78


>SB_51338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 392 YAVLAARLAISNLHKETKKHFSDVMKDLFDIVNPHT 499
           + +  AR+     H E+ K  S    DLF ++ PH+
Sbjct: 532 FGIAIARVLYDKAHDESDKEESVYHSDLFAMIGPHS 567


>SB_25801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 86

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = +2

Query: 281 VCITLKVINGMYSGVTTVELD-----NLAAETAATMTTDHPDYAVLAAR 412
           VC  ++ +NG  +GV  V+L       L  E  +  TT+HP+   LA R
Sbjct: 6   VCTGVQDMNGRITGVQVVDLTWIRTPALLFEKGSLCTTEHPEGRDLAVR 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,498,553
Number of Sequences: 59808
Number of extensions: 294835
Number of successful extensions: 691
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)