Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G06f
         (504 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    25   1.5  
AY280612-1|AAQ21365.1|  309|Anopheles gambiae carbonic anhydrase...    25   1.9  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    23   4.5  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    23   4.5  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    23   4.5  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    23   4.5  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    23   5.9  

>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -1

Query: 300 TFSVIHTGSTKSIFNP*HSFLILDVILSICTSSILPPLFKTYNLFILPTILV 145
           TF VI  G     F+  ++  +LD    I   +I   +   ++LFI+ TILV
Sbjct: 113 TFVVISKGKDIFRFSATNALYVLDPFNPIRRVAIYILVHPLFSLFIITTILV 164


>AY280612-1|AAQ21365.1|  309|Anopheles gambiae carbonic anhydrase
           protein.
          Length = 309

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -3

Query: 412 PGCKNSIIWMIGSHCSSCLCSKIIQFHSCHSRV--HSIDNF 296
           P C  S+IW + +   S    ++ +F + H +     ++NF
Sbjct: 219 PACAESVIWTVFTESISVSLEQVERFKAIHDQTGRELVNNF 259


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 224 SCLYAPPPFFRLSLKRTIYSF 162
           SCLY PP  F+ + K  I  F
Sbjct: 118 SCLYVPPGIFKSTCKIDITWF 138


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 224 SCLYAPPPFFRLSLKRTIYSF 162
           SCLY PP  F+ + K  I  F
Sbjct: 135 SCLYVPPGIFKSTCKIDITWF 155


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 224 SCLYAPPPFFRLSLKRTIYSF 162
           SCLY PP  F+ + K  I  F
Sbjct: 135 SCLYVPPGIFKSTCKIDITWF 155


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 224 SCLYAPPPFFRLSLKRTIYSF 162
           SCLY PP  F+ + K  I  F
Sbjct: 150 SCLYVPPGIFKSTCKIDITWF 170


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = -3

Query: 397  SIIWMIGSHC--SSCLCSKIIQFHSC 326
            S I M  +H    SCLCS ++Q  +C
Sbjct: 1866 SAIHMHAAHSLFPSCLCSSVMQIVAC 1891


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 507,012
Number of Sequences: 2352
Number of extensions: 9008
Number of successful extensions: 18
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 45245913
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)