Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G06f
         (504 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119149-1|AAM51009.1|  812|Drosophila melanogaster RE58177p pro...   180   1e-45
AF132143-1|AAD33590.1|  812|Drosophila melanogaster ribonucleosi...   180   1e-45
AE014134-1838|AAF52913.2|  812|Drosophila melanogaster CG5371-PA...   180   1e-45
AE014297-2349|AAF55416.1|  465|Drosophila melanogaster CG17283-P...    31   0.89 
AE014134-1917|AAF52975.1|  510|Drosophila melanogaster CG6138-PB...    29   4.7  

>AY119149-1|AAM51009.1|  812|Drosophila melanogaster RE58177p
           protein.
          Length = 812

 Score =  180 bits (437), Expect = 1e-45
 Identities = 84/113 (74%), Positives = 97/113 (85%)
 Frame = +2

Query: 161 KMNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVEL 340
           K +KLYV+KR GR EEVH DKITSRI+KLCY LNMDFVDPV ITL+VING+Y GVTT EL
Sbjct: 8   KTSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQEL 67

Query: 341 DNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVNPHT 499
           DNLAAE AA +T +HPDYA+LAAR+A+SNLHKETKK FSDV +DL++ VN  T
Sbjct: 68  DNLAAEIAAGLTCNHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKET 120


>AF132143-1|AAD33590.1|  812|Drosophila melanogaster ribonucleoside
           reductase M1 subunitprotein.
          Length = 812

 Score =  180 bits (437), Expect = 1e-45
 Identities = 84/113 (74%), Positives = 97/113 (85%)
 Frame = +2

Query: 161 KMNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVEL 340
           K +KLYV+KR GR EEVH DKITSRI+KLCY LNMDFVDPV ITL+VING+Y GVTT EL
Sbjct: 8   KTSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQEL 67

Query: 341 DNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVNPHT 499
           DNLAAE AA +T +HPDYA+LAAR+A+SNLHKETKK FSDV +DL++ VN  T
Sbjct: 68  DNLAAEIAAGLTCNHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKET 120


>AE014134-1838|AAF52913.2|  812|Drosophila melanogaster CG5371-PA
           protein.
          Length = 812

 Score =  180 bits (437), Expect = 1e-45
 Identities = 84/113 (74%), Positives = 97/113 (85%)
 Frame = +2

Query: 161 KMNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVEL 340
           K +KLYV+KR GR EEVH DKITSRI+KLCY LNMDFVDPV ITL+VING+Y GVTT EL
Sbjct: 8   KTSKLYVIKRDGRQEEVHFDKITSRIQKLCYNLNMDFVDPVTITLQVINGLYCGVTTQEL 67

Query: 341 DNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVNPHT 499
           DNLAAE AA +T +HPDYA+LAAR+A+SNLHKETKK FSDV +DL++ VN  T
Sbjct: 68  DNLAAEIAAGLTCNHPDYAILAARIAVSNLHKETKKAFSDVFEDLYNHVNKET 120


>AE014297-2349|AAF55416.1|  465|Drosophila melanogaster CG17283-PA
           protein.
          Length = 465

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 412 PGCKNSIIWMIGSHCSSCLCSKIIQFHSCHSRVH 311
           P   +S IW+ G HC S  C K  Q+H   S  +
Sbjct: 167 PDTGSSNIWVPGPHCKSKACKKHKQYHPAKSSTY 200


>AE014134-1917|AAF52975.1|  510|Drosophila melanogaster CG6138-PB,
           isoform B protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = -3

Query: 421 YCKPGCKNSIIWMIGSHCSSCL-CSKII---QFHSCHSRVHSIDNF*C 290
           +C PGC  +I W + + CS+ L C KI+   ++  C   V SI +F C
Sbjct: 219 FCVPGCNFNIFWCLRA-CSNFLDCRKILISFRYEICSLSV-SIADFIC 264


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,913,876
Number of Sequences: 53049
Number of extensions: 421249
Number of successful extensions: 1090
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1804766976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)