Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G06f
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical pr...   173   5e-44
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    30   0.83 
U64833-6|AAK95861.1|  350|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    27   7.7  
AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical
           protein T23G5.1 protein.
          Length = 788

 Score =  173 bits (422), Expect = 5e-44
 Identities = 79/113 (69%), Positives = 96/113 (84%)
 Frame = +2

Query: 161 KMNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVEL 340
           + N  YV+KR GR E+VH DKITSRI+KL YGLNMDFVDPV + +KVI+G+Y GVTTVEL
Sbjct: 3   RYNSTYVVKRDGRKEDVHFDKITSRIQKLSYGLNMDFVDPVAVAIKVISGLYKGVTTVEL 62

Query: 341 DNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVNPHT 499
           DNLAAETAA+MTT HP+YA+LAAR+A+SNLHK+T K FS+VMK L +  +PHT
Sbjct: 63  DNLAAETAASMTTQHPEYALLAARIAVSNLHKKTNKVFSEVMKTLHEFHHPHT 115


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 30.3 bits (65), Expect = 0.83
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 319 GSDNCGTG*SCCRDSCYNDYRSSRLCCSCSQAC 417
           G   CG G  CCR  C       R CC+C + C
Sbjct: 78  GCCGCGCGCCCCRPRC---CCCCRRCCTCCRTC 107


>U64833-6|AAK95861.1|  350|Caenorhabditis elegans Hypothetical
           protein B0507.8 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 428 LHKETKKHFSDVMKDLFDIVN 490
           + +E  K FSD+  DLF+I+N
Sbjct: 290 IEEENNKRFSDLKDDLFNIIN 310


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +1

Query: 319 GSDNCGTG*SCCRDSCYNDYRSSRLCCSCSQAC 417
           G    G G  CCR  C       R CC+C + C
Sbjct: 77  GGGGGGCGCCCCRPKC---CCCCRRCCTCCRTC 106


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
            homolog protein 1 protein.
          Length = 1722

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 11/82 (13%)
 Frame = +1

Query: 220  QDNIKN*KTMLWIKYGFC*SGVYNTKSYQWNVLGSDNCGTG*SCCRD-SCYN-----DYR 381
            +DN+ + K +   K+G+C  G+   K    N    ++C      C    C+N       R
Sbjct: 1210 EDNVNDCKFVDCGKHGYCLDGIDEAKCICNNGFHGEHCELAKDECEGVECHNGGKCVKNR 1269

Query: 382  SSRLCCSC-----SQACNIKLT 432
            S ++ C C       +CN+  T
Sbjct: 1270 SEKIVCQCGNSWMGDSCNVTKT 1291


>AF026207-1|AAB71266.1|  522|Caenorhabditis elegans Hypothetical
           protein H42K12.3 protein.
          Length = 522

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 326 TTVELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIV 487
           T  E+    A T  T TT+ P     A +   ++LHK+ KKH  +     ++I+
Sbjct: 290 TEEEVTTTEAPTTTT-TTEEPTTEASAPKRIKAHLHKKIKKHPKNFGSKTYEIL 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,104,709
Number of Sequences: 27780
Number of extensions: 228581
Number of successful extensions: 654
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)