Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306G06f
(504 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 27 0.084
DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor pro... 25 0.34
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 24 0.78
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 24 1.0
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 1.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 1.4
AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine beta-sy... 23 1.4
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 3.2
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 4.2
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 4.2
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 4.2
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 4.2
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 21 7.3
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 21 7.3
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 9.6
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 27.5 bits (58), Expect = 0.084
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 157 W*NE*IVRFKERRKNGGGAYRQDN 228
W + +VR RRKN GG Y DN
Sbjct: 255 WHQKELVRRDSRRKNYGGVYHLDN 278
>DQ151547-1|ABA39280.1| 405|Apis mellifera tyramine receptor
protein.
Length = 405
Score = 25.4 bits (53), Expect = 0.34
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = -1
Query: 246 SFLILDVILSICTSSILPPLFKTYNLFILPTILVFYNSRRKTK 118
S++ LD++L CT+SIL + + ++ T + Y+ RR++K
Sbjct: 113 SWVSLDILL--CTASILSLCAISIDRYLAVTQPLIYSRRRRSK 153
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 24.2 bits (50), Expect = 0.78
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 224 SCLYAPPPFFRLSLKRTIYSF 162
SCLY PP F+ + K I F
Sbjct: 98 SCLYVPPGIFKSTCKMDIAWF 118
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 224 SCLYAPPPFFRLSLKRTIYSF 162
SCLY PP F+ + K + F
Sbjct: 98 SCLYVPPGIFKSTCKMDVAWF 118
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 224 SCLYAPPPFFRLSLKRTIYSF 162
SCLY PP F+ + K I F
Sbjct: 98 SCLYVPPGIFKSTCKIDIAWF 118
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 224 SCLYAPPPFFRLSLKRTIYSF 162
SCLY PP F+ + K I F
Sbjct: 98 SCLYVPPGIFKSTCKIDITWF 118
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.4 bits (48), Expect = 1.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 224 SCLYAPPPFFRLSLKRTIYSF 162
SCLY PP F+ + K I F
Sbjct: 98 SCLYVPPGIFKSTCKIDITWF 118
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 1.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 224 SCLYAPPPFFRLSLKRTIYSF 162
SCLY PP F+ + K I F
Sbjct: 166 SCLYVPPGIFKSTCKIDITWF 186
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.4 bits (48), Expect = 1.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 224 SCLYAPPPFFRLSLKRTIYSF 162
SCLY PP F+ + K I F
Sbjct: 166 SCLYVPPGIFKSTCKIDITWF 186
>AB244761-1|BAE66603.1| 504|Apis mellifera cystathionine
beta-synthase protein.
Length = 504
Score = 23.4 bits (48), Expect = 1.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 172 FIHFTNHFSILQFSTEN 122
FI N F ILQF T+N
Sbjct: 479 FIGIVNQFHILQFITKN 495
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 3.2
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 224 SCLYAPPPFFRLSLKRTIYSF 162
+CLY PP F+ + K I F
Sbjct: 135 TCLYVPPGIFKSTCKIDITWF 155
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 4.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 224 SCLYAPPPFFRLSLKRTIYSF 162
SCLY PP F + K I F
Sbjct: 98 SCLYVPPGIFGSTCKIDIAWF 118
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.8 bits (44), Expect = 4.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 174 NLFILPTILVFYNSRRKTK*MLF 106
NL ILP + F+N T+ + F
Sbjct: 102 NLIILPVAISFFNDDLSTRWIAF 124
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.8 bits (44), Expect = 4.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 174 NLFILPTILVFYNSRRKTK*MLF 106
NL ILP + F+N T+ + F
Sbjct: 102 NLIILPVAISFFNDDLSTRWIAF 124
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.8 bits (44), Expect = 4.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -1
Query: 174 NLFILPTILVFYNSRRKTK*MLF 106
NL ILP + F+N T+ + F
Sbjct: 102 NLIILPVAISFFNDDLSTRWIAF 124
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 21.0 bits (42), Expect = 7.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 480 SNKSFITSEKCFFVSLCKFDI 418
++KS T F VSL FDI
Sbjct: 84 TSKSLRTPSNMFIVSLAIFDI 104
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 21.0 bits (42), Expect = 7.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 480 SNKSFITSEKCFFVSLCKFDI 418
++KS T F VSL FDI
Sbjct: 84 TSKSLRTPSNMFIVSLAIFDI 104
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 20.6 bits (41), Expect = 9.6
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -2
Query: 281 PDQQNPYLIHNIVF*FLMLSCLYAPP 204
P QQNPY+ + + ++ + PP
Sbjct: 822 PPQQNPYMFLPVSYMSTTMAGVIYPP 847
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,540
Number of Sequences: 438
Number of extensions: 2781
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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