Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G06f
         (504 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21790.1 68415.m02590 ribonucleoside-diphosphate reductase sm...   145   1e-35
At1g07610.1 68414.m00815 metallothionein-like protein 1C (MT-1C)...    31   0.44 
At1g07600.1 68414.m00813 metallothionein-like protein 1A (MT-1A)...    31   0.44 
At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N domain-...    29   1.8  
At5g55110.1 68418.m06870 stigma-specific Stig1 family protein si...    28   3.1  
At2g25790.1 68415.m03095 leucine-rich repeat transmembrane prote...    28   3.1  
At3g49150.1 68416.m05372 F-box family protein contains F-box dom...    28   4.1  
At4g39250.1 68417.m05556 myb family transcription factor contain...    27   5.4  
At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase, chloro...    27   7.2  
At4g34520.1 68417.m04906 fatty acid elongase 1 (FAE1) identical ...    27   9.5  
At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70...    27   9.5  
At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloro...    27   9.5  

>At2g21790.1 68415.m02590 ribonucleoside-diphosphate reductase small
           chain, putative / ribonucleotide reductase, putative
           similar to ribonucleotide reductase GI:4151068 from
           [Nicotiana tabacum]
          Length = 816

 Score =  145 bits (352), Expect = 1e-35
 Identities = 68/106 (64%), Positives = 82/106 (77%)
 Frame = +2

Query: 173 LYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVTTVELDNLA 352
           +YV+KR GR E VH DKIT+R+KKL YGL+ D  DPV +  KV  G+Y GVTT +LD LA
Sbjct: 1   MYVVKRDGRQETVHFDKITARLKKLSYGLSSDHCDPVLVAQKVCAGVYKGVTTSQLDELA 60

Query: 353 AETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVN 490
           AETAA MT +HPDYA LAAR+A+SNLHK TKK FS+ +KD+F  VN
Sbjct: 61  AETAAAMTCNHPDYASLAARIAVSNLHKNTKKSFSETIKDMFYHVN 106


>At1g07610.1 68414.m00815 metallothionein-like protein 1C (MT-1C)
           identical to Metallothionein-like protein 1C (MT-1C).
           (SP:Q38804) (Arabidopsis thaliana)
          Length = 45

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 316 LGSDNCGTG*SC-CRDSCYNDYRSSRLCCSCSQACN 420
           +   NCG G SC C DSC  +   ++ C +CS   N
Sbjct: 1   MAGSNCGCGSSCKCGDSCSCEKNYNKECDNCSCGSN 36


>At1g07600.1 68414.m00813 metallothionein-like protein 1A (MT-1A)
           (MT-Q) (MT-2) identical to Metallothionein-like protein
           1A (MT-1A) (MT-Q) (MT-2) SP:P43392 from (Arabidopsis
           thaliana)
          Length = 45

 Score = 31.1 bits (67), Expect = 0.44
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +1

Query: 316 LGSDNCGTG*SC-CRDSCYNDYRSSRLCCSCSQACN 420
           +   NCG G SC C DSC  +   ++ C +CS   N
Sbjct: 1   MADSNCGCGSSCKCGDSCSCEKNYNKECDNCSCGSN 36


>At2g33000.1 68415.m04044 ubiquitin-associated (UBA)/TS-N
           domain-containing protein-related contains weak hit to
           Pfam F00627: UBA/TS-N domain; supported by tandem
           duplication of ubiquitin-associated (UBA)/TS-N domain
           protein (GI:2924790) (TIGR_Ath1:At2g33010) [Arabidopsis
           thaliana]
          Length = 508

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 20/73 (27%), Positives = 35/73 (47%)
 Frame = +2

Query: 269 FVDPVCITLKVINGMYSGVTTVELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKK 448
           F DPV    ++I G  +G TT+ L  L A T +       +  V   R AI  L  + +K
Sbjct: 415 FPDPVAYQDRIIVGPRAGGTTITLTILLANTRSVNIPFRSNQTVRDIRDAIDELTPDYEK 474

Query: 449 HFSDVMKDLFDIV 487
            +  +++ + ++V
Sbjct: 475 DY--ILQSMAEVV 485


>At5g55110.1 68418.m06870 stigma-specific Stig1 family protein
           similar to stigma-specific protein STIG1 [Nicotiana
           tabacum] GI:496647; contains Pfam profile PF04885:
           Stigma-specific protein, Stig1
          Length = 163

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 316 LGSDNCGTG*SCCRDSCYNDYRSSRLCCSCSQACNI 423
           L  + C  G +CCR  C       R C  C+  C++
Sbjct: 116 LCKNKCKFGQTCCRGQCVYVAYDKRHCGECNHRCDL 151


>At2g25790.1 68415.m03095 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 960

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 266 PYLIHNIVF*FLMLSCLYAPPPFFRLSLKRTI 171
           PYLI  + F FL  SCL+A      LS K +I
Sbjct: 11  PYLITTLFFLFLNFSCLHANELELLLSFKSSI 42


>At3g49150.1 68416.m05372 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 590

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 266 DFVDPVCITLKVINGMYSGVTTVELDNLAAETAATMTTD 382
           DF DP C++  + N M  GV+ ++L  +      TM  D
Sbjct: 103 DFTDPTCVSRWISNVMERGVSDLDLRCIVYWDNGTMPPD 141


>At4g39250.1 68417.m05556 myb family transcription factor contains
           PFAM profile: PF00249 myb-like DNA binding domain
          Length = 97

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +2

Query: 317 SGVTTVELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVNPH 496
           SG  T + +    +  AT   D P+     A++      +E K+H+  +++D+  I N H
Sbjct: 11  SGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENGH 70


>At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase,
           chloroplast, putative strong similarity to SP|P29102
           3-isopropylmalate dehydrogenase, chloroplast precursor
           {Brassica napus}
          Length = 409

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 19/82 (23%), Positives = 32/82 (39%)
 Frame = +2

Query: 143 NTKMVGKMNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSG 322
           N + VG   ++Y      R+  V  +    R  KLC     + +D   +  K +  + S 
Sbjct: 197 NGEEVGVSTEIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLDASILWRKRVTALASE 256

Query: 323 VTTVELDNLAAETAATMTTDHP 388
              VEL ++  + AA      P
Sbjct: 257 YPDVELSHMYVDNAAMQLIRDP 278


>At4g34520.1 68417.m04906 fatty acid elongase 1 (FAE1) identical to
           fatty acid elongase 1 [GI:881615]
          Length = 506

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 296 LVLYTPDQQNP-YLIHNIVF*FLMLSCLYAPPPFFRLSLKRTIYSFYQ 156
           LVLY   + NP YL+          SC Y PPP  ++S+ + +  FYQ
Sbjct: 66  LVLYIVTRPNPVYLVD--------YSC-YLPPPHLKVSVSKVMDIFYQ 104


>At3g12580.1 68416.m01567 heat shock protein 70, putative / HSP70,
           putative strong similarity to heat shock protein
           GI:425194 [Spinacia oleracea]
          Length = 650

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 26/115 (22%), Positives = 47/115 (40%)
 Frame = +2

Query: 149 KMVGKMNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSGVT 328
           K  G+ NK+ +    GR+ +  I+K+    +K     + +    V     + N  Y+   
Sbjct: 499 KTTGQKNKITITNDKGRLSKEEIEKMVQEAEKY-KAEDEEHKKKVDAKNALENYAYNMRN 557

Query: 329 TVELDNLAAETAATMTTDHPDYAVLAARLAISNLHKETKKHFSDVMKDLFDIVNP 493
           T++ + +A++  A       D    A      N   E  + F D MK+L  + NP
Sbjct: 558 TIKDEKIASKLDAADKKKIEDAIDQAIEWLDGNQLAEADE-FEDKMKELESLCNP 611


>At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase,
           chloroplast, putative strong similarity to SP|P29102
           3-isopropylmalate dehydrogenase, chloroplast precursor
           {Brassica napus}; EST gb|F14478 comes from this gene
          Length = 404

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 19/82 (23%), Positives = 32/82 (39%)
 Frame = +2

Query: 143 NTKMVGKMNKLYVLKRGGRMEEVHIDKITSRIKKLCYGLNMDFVDPVCITLKVINGMYSG 322
           N + VG   ++Y      R+  V  +    R  KLC     + +D   +  K +  + S 
Sbjct: 194 NGEEVGFNTEIYAAHEIDRIARVAFETARKRRGKLCSVDKANVLDASILWRKRVTALASE 253

Query: 323 VTTVELDNLAAETAATMTTDHP 388
              VEL ++  + AA      P
Sbjct: 254 YPDVELSHMYVDNAAMQLVRDP 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,166,693
Number of Sequences: 28952
Number of extensions: 200803
Number of successful extensions: 532
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 898188928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)