Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    40   2e-04
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    27   1.3  
SPBC725.03 |||conserved fungal protein|Schizosaccharomyces pombe...    27   1.3  
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa...    27   1.7  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    26   3.0  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    26   3.9  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    26   3.9  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   5.2  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    25   6.8  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   6.8  

>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 33/126 (26%), Positives = 50/126 (39%), Gaps = 6/126 (4%)
 Frame = +1

Query: 19   WXXXXXXXXXXCVLGSRNIFQRRLPHTNCYNGIDYQRPVRREV---CECSRRDFECDFGF 189
            W          C+ G  + F R+  H  C  G      V+ EV   CEC+R DFECD+ +
Sbjct: 1230 WVPTDISGKPLCLRGRISSFYRKSIHKKCRVGSSLL--VKEEVLSKCECTRADFECDYNY 1287

Query: 190  -MLSGEECIQNKSVKFDPYAVPVYCRPGQ--HYKRTKGYRKIDGDVCTISGYTPYASDII 360
              L    C+    ++  P      C       +++  GY++     C   G    A  + 
Sbjct: 1288 RRLKDGTCVLVSGLQ-PPDTREEQCSVDDAFEWRQPTGYKRTPLTECE-GGVPLDAGTLH 1345

Query: 361  PCPLEE 378
            PCP +E
Sbjct: 1346 PCPGKE 1351



 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 142 EVCECSRRDFECDFGFMLSGE-EC 210
           + CEC+  D+EC+  F+ + + EC
Sbjct: 619 DACECTDEDYECNTQFISNDQGEC 642


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 128 DPSGGKSANVAVETSNAISVLCYP 199
           DP GGK      ETS+A  +L YP
Sbjct: 439 DPFGGKLPTTYEETSSATGLLAYP 462


>SPBC725.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 257

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 39  FVRVVCARLE-EYLSATPPPHELLQRNRLPKTRQ 137
           F  VVC   E E+L+ TPPP + +  NR   T+Q
Sbjct: 216 FSLVVCEANEVEFLNLTPPPGKRVLHNRDLNTKQ 249


>SPBP19A11.01 |||glycine decarboxylase complex subunit
           H|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 169

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +1

Query: 271 QHYKRTKGYRKIDGDVCTISGYTPYASDII--PCPLEEPVEFMLVALRDKIARID-LSDN 441
           +H+ +   + K+DGDV T+ G T YA++ +     +E P     V++ D I  ++ +   
Sbjct: 45  KHFTKEHEWVKVDGDVGTV-GITSYAANALGEVVFVELPEPETTVSVGDGIGAVESVKSA 103

Query: 442 TTIY-PVEG 465
           + +Y PV G
Sbjct: 104 SDVYSPVSG 112


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 74  SFSDASPTRTVTTESITKDPSGGK 145
           SF+D+S     T  SITK PSG K
Sbjct: 754 SFNDSSSISNNTKISITKSPSGEK 777


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 190 MLSGEECIQ--NKSVKFDPYAVPVYCRPGQHYKRTKGYRK 303
           +++  ECI+  NK+++ DP     Y R  Q     K Y K
Sbjct: 446 VMAPAECIRDCNKAIELDPNFAKAYVRKAQALFMLKDYNK 485


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 52  CVLGSRNIFQRRLPHTNCYNGIDYQR 129
           CVL SRN++Q    +  C     YQR
Sbjct: 433 CVLESRNLWQTSFAYWKCVADSGYQR 458


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 301  KIDGDVCTISGY-TPYASDIIPCPLEEPVEFMLVAL 405
            K  G +  +S Y + YA+D  PCP +E ++  L  +
Sbjct: 940  KEGGLLSALSSYLSSYANDEPPCPTDEEIQHTLCTI 975


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 409 DKIARIDLSDNTTIYPVEGQNNIVAIEFDL 498
           +K+  + +  N  + P E   NI  IEFDL
Sbjct: 622 EKVFTVHVRANKRLTPAEYNRNIFHIEFDL 651


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -1

Query: 272 WPGRQYTGTA*GSNFTDLF*MHSSPDNIKPKSHSKSRRLHS 150
           W G     T   S  T L  + SSP ++K  SH K   LHS
Sbjct: 593 WVGNIMNDTIADSVITILLGIESSPASVKLTSH-KCNHLHS 632


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,996
Number of Sequences: 5004
Number of extensions: 45250
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)