Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G05f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1065 - 25777899-25778412,25778805-25778893                       28   4.0  
01_04_0008 + 15041682-15041909,15042035-15042319,15042406-150427...    28   4.0  
12_02_1015 + 25331667-25332169,25333305-25333406,25333775-253339...    27   6.9  
08_02_0233 + 14593639-14594468,14594480-14594986,14595362-145958...    27   6.9  
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184     27   6.9  

>12_02_1065 - 25777899-25778412,25778805-25778893
          Length = 200

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 94  GGGVAERYSSSRAHTTRTNSAAKATRTSCRI 2
           GGGV ER  S+ A TT T+S+ K    +C +
Sbjct: 133 GGGVVERRRSTSAATT-TSSSTKPIAVNCEV 162


>01_04_0008 +
           15041682-15041909,15042035-15042319,15042406-15042723,
           15044087-15044128,15045111-15045391,15045808-15045883,
           15046196-15046296,15047971-15048088,15048872-15049186
          Length = 587

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 27/98 (27%), Positives = 37/98 (37%)
 Frame = +1

Query: 130 PVRREVCECSRRDFECDFGFMLSGEECIQNKSVKFDPYAVPVYCRPGQHYKRTKGYRKID 309
           P  R+    + +   C + F+LS     +N SVKF  Y  P        Y+   GY    
Sbjct: 354 PAERQTATSALQSEVCPYLFLLS--IVTENVSVKFGLYQGP------HLYEGLNGYFDFQ 405

Query: 310 GDVCTISGYTPYASDIIPCPLEEPVEFMLVALRDKIAR 423
                     PYA D    P   P + M   +RD+ AR
Sbjct: 406 YRFQKFFATEPYACDPSSLPTYPPSKEMDAKMRDEEAR 443


>12_02_1015 +
           25331667-25332169,25333305-25333406,25333775-25333919,
           25334002-25334186,25334297-25334401,25334507-25334604,
           25334686-25334924,25335030-25335123,25335190-25335275,
           25335579-25335677,25335804-25335869
          Length = 573

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 3   IRHEVLVAFAAEFVRVVCARLEEYLSATPPPHELLQR 113
           IR++VL  FA+   RV C RL +       PH +L++
Sbjct: 516 IRNQVLNEFASAEPRVPCKRLADGSKRVQVPHFMLEQ 552


>08_02_0233 +
           14593639-14594468,14594480-14594986,14595362-14595856,
           14596592-14596662,14597116-14597199,14597328-14597446,
           14598029-14598109,14598397-14598411
          Length = 733

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 516 VNTIVLQIEFYGDYVILSFDGVDG 445
           V  + LQ++FY +Y+ +  D  DG
Sbjct: 327 VRVLKLQLDFYAEYITMEADACDG 350


>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
          Length = 544

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 27/95 (28%), Positives = 35/95 (36%)
 Frame = -2

Query: 301 SCSPWSACSAGPGDNTRGRRKDRTSPTYSECTPXXXXXXXXXXRSLDGYIRRLPS*RVFG 122
           SC PWSA + G G           +  Y  C            RS+   +R LP+ RVF 
Sbjct: 109 SCEPWSAGARGGGGAAASGEGLAVNRAYKRC--------ITLLRSVYTALRLLPAYRVFR 160

Query: 121 NRFRCNSSCGGGVAERYSSSRAHTTRTNSAAKATR 17
                  +    +  R  S  A  TR   AA +TR
Sbjct: 161 LLCASGQAYNYEMGFRVGSFAAPFTRAEEAAMSTR 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,950,289
Number of Sequences: 37544
Number of extensions: 326581
Number of successful extensions: 931
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)