Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306G05f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11) 67 7e-12
SB_3225| Best HMM Match : PKD (HMM E-Value=8.5e-09) 62 3e-10
SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39) 32 0.33
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.33
SB_43442| Best HMM Match : BNR (HMM E-Value=0.00033) 30 1.0
SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38) 29 3.1
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 29 3.1
SB_8034| Best HMM Match : Astacin (HMM E-Value=0) 28 4.1
SB_9636| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0) 23 4.6
SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55) 28 5.4
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 28 5.4
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17) 27 7.1
SB_55477| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26) 27 9.4
SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_11193| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_37830| Best HMM Match : Peptidase_C54 (HMM E-Value=3.3e-11)
Length = 878
Score = 67.3 bits (157), Expect = 7e-12
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = +1
Query: 283 RTKG-YRKIDGDVCTISGYTPYASDIIPCPLEEPVEFMLVALRDKIARIDLSDN-TTIYP 456
R KG YRK+ GD C YA I CP+ ++F+L A R I R+ L D+ + P
Sbjct: 781 RQKGKYRKVSGDTCEKGLEDVYAPYKISCPVPSLLQFLLYAQRTSIRRVTLGDHLESTLP 840
Query: 457 VEGQNNIVAIEFDLKNNCIYW 519
+ G N +A++FD + NC+YW
Sbjct: 841 LSGLRNAIALDFDYRENCVYW 861
>SB_3225| Best HMM Match : PKD (HMM E-Value=8.5e-09)
Length = 1080
Score = 62.1 bits (144), Expect = 3e-10
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +1
Query: 52 CVLGSRNIFQRRLPHTNCYNGIDYQRPVRREVCECSRRDFECDFGFMLSGEECIQNKSVK 231
C LG ++ RR C+NG DY + R C C+ D+ CD GF ++ N+
Sbjct: 458 CSLGEMIVYTRRKASDCCFNGRDYNGSIIRGTCNCTDEDYMCDVGFKRDRDD---NECYP 514
Query: 232 FD-PYAVPVYCRPGQHYKRTKGYRKIDGDVCT 324
D VP C +Y ++ GYRK+ GD C+
Sbjct: 515 EDLAVLVPDPCPETTYYMKSSGYRKVPGDRCS 546
>SB_16934| Best HMM Match : Ldl_recept_b (HMM E-Value=1.7e-39)
Length = 407
Score = 31.9 bits (69), Expect = 0.33
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 388 FMLVALRDKIARIDLSDNTTIYPVEGQNNIVAIEFDLKNNCIYW 519
F++ + I I+L Y V G N+V ++FD+K+ IYW
Sbjct: 62 FIIFSNTVDIRHINLDGTGYGYIVRGLINVVGLDFDVKSGYIYW 105
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 31.9 bits (69), Expect = 0.33
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +1
Query: 379 PVEFMLVALRDKIARIDLS--DNT-TIYPVEGQNNIVAIEFDLKNNCIYW 519
P F+L+A R + RI L D+T + P G + +A++FD IYW
Sbjct: 476 PKHFLLLARRTDLRRISLDTPDHTDVVLPFVGIKHGIAVDFDPIEEYIYW 525
>SB_43442| Best HMM Match : BNR (HMM E-Value=0.00033)
Length = 510
Score = 30.3 bits (65), Expect = 1.0
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 52 CVLGSRNIFQRRLPHTNCYNGIDYQRPVRREVCECSRRDFE 174
C+ G + R L CYNG D+ + C C+ D E
Sbjct: 469 CLEGRSHSGGRNLTRCTCYNGEDFVGMTAMDHCSCTMADLE 509
>SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 837
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = -3
Query: 375 FKGTRYDI*GVGRVSTDRAHVTVYFPVALGPLVVLARATIHGDGV 241
F R G +V+T HVT + V L VV A HGDGV
Sbjct: 286 FSSIRQRSEGKSKVTTFDLHVTAHASVPLTEDVVFKVAVSHGDGV 330
>SB_39072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1011
Score = 28.7 bits (61), Expect = 3.1
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +2
Query: 242 TP-SPCIVARASTTSGPRATGK*TVTCARSVDTRPTPQISYRVPLKNQLSSC**HLETKL 418
TP +P + ST S PR + C S + P+ I+ R P S+ H
Sbjct: 379 TPCTPSTPSTPSTPSTPRTPSTPSTPCTPSTPSTPSTPITPRTP-----STPCTHSTPGT 433
Query: 419 PASIYPTIQPSTPSKDKIT*SP 484
P++ PSTPS +T +P
Sbjct: 434 PSTPSTPSTPSTPSTPSLTHTP 455
>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
Length = 525
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 163 RDFECDFGFMLSGEECIQNKSVKFDPYAVPVYCRPGQHYKRTKGY 297
R+ + F S E + V F P A +Y + GQ YK+ Y
Sbjct: 353 REHQAVMPFKCSYERKVVLSVVSFSPRAAKLYTKTGQRYKQKHSY 397
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = -2
Query: 289 WSACSAGPGDNTRGRRKDRTSPTYSECTPXXXXXXXXXXRSLDGYIRRLPS*RVFGNRFR 110
W+ CS G T+ RR+ +PT++ + + + R P + +
Sbjct: 236 WNTCSTSCGGGTQERRRLCQNPTHA-VSGADCSALGPALETRECNARACPIDGAYNDWSE 294
Query: 109 ---CNSSCGGGVAERY 71
C+ +CGGGV +RY
Sbjct: 295 WSICDVTCGGGVQQRY 310
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 346 RRACIH*SCTRHRLFSC-SPWSACSAGPGDNTRGRRKDRTSPTYSECT 206
+++C C+ H +PWS C+A G + R +D P + + T
Sbjct: 830 KKSCELVECSSHCTCGAWAPWSTCTATCGGGFQERTRDCVPPKHGKMT 877
Score = 27.5 bits (58), Expect = 7.1
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Frame = -2
Query: 337 CIH*SCTRHRLFS-CSPWSACSAGPGDNTRGRRKDRTSPTYSECTPXXXXXXXXXXRSLD 161
C C H ++ +PW+ CS G R R + T+P S +S+
Sbjct: 538 CYRRMCPIHGNYTPWTPWTECSKSCGPGIRTRERTCTNPPPSS-GGLDCLRFGNYAQSVQ 596
Query: 160 GYIRRLP---S*RVFGNRFRCNSSCGGGVAER 74
Y+ P + + N C+++CG G R
Sbjct: 597 CYVADCPINGNYSAWSNWTSCSATCGEGTMTR 628
Score = 27.1 bits (57), Expect = 9.4
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Frame = -2
Query: 337 CIH*SCTRHRLFS-CSPWSACS--AGPGDNTRGRRKDRTSPTYS--ECTPXXXXXXXXXX 173
C + C H ++ + WS+C+ G G TR R + P + +CT
Sbjct: 1008 CFNSECPVHGKYTPWTGWSSCTKTCGFGIETRWRTCSKPEPMHGGRDCTDQGDPEQTRPC 1067
Query: 172 RSLDGYIR-RLPS*RVFGNRFRCNSSCGGGVAERYSS 65
+++ I S FG C+SSCG GV R S
Sbjct: 1068 QNIPCPIHGNYSSWSSFG---ACSSSCGKGVKTRTRS 1101
Score = 23.8 bits (49), Expect(2) = 5.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -2
Query: 112 RCNSSCGGGVAERYSSSRA 56
+C SSCG GV R S A
Sbjct: 1496 KCTSSCGKGVRSRSRSCTA 1514
Score = 22.2 bits (45), Expect(2) = 5.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 295 SPWSACSAGPGDNTRGRRKDRTSP 224
S W+ CS G R R ++ T+P
Sbjct: 1455 SEWTGCSKTCGTGFRSRIRNCTNP 1478
>SB_8034| Best HMM Match : Astacin (HMM E-Value=0)
Length = 368
Score = 28.3 bits (60), Expect = 4.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 475 CYFVLRRGRWLYCRINRC 422
CY L + RW YC I C
Sbjct: 342 CYTTLEKTRWQYCEIRSC 359
>SB_9636| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +1
Query: 52 CVLGSRNIFQRRLPHTNCYNGIDYQRPVRREVCECSRRDFE 174
C+LG + ++ R C G DY+ + C C R DFE
Sbjct: 45 CILGEQVEYKIRNWTKTCLMGKDYEAGKVVKSCTCRRVDFE 85
>SB_2401| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 818
Score = 23.4 bits (48), Expect(2) = 4.6
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Frame = -2
Query: 352 LRRRACIH*SCTRHRLFS-CSPWSACSAGPGDNTRGRRKDRTSP 224
L+ AC C + +S S WS CS G R + T+P
Sbjct: 430 LKTEACNTKPCPVNGAWSDFSKWSTCSKSCGGGIMSRTRTCTNP 473
Score = 23.0 bits (47), Expect(2) = 4.6
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = -2
Query: 109 CNSSCGGGVAER 74
C SCGGG+ R
Sbjct: 512 CTKSCGGGIMSR 523
>SB_45040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 428
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/74 (24%), Positives = 26/74 (35%)
Frame = -2
Query: 295 SPWSACSAGPGDNTRGRRKDRTSPTYSECTPXXXXXXXXXXRSLDGYIRRLPS*RVFGNR 116
S WS CS G RGR + +P + + + +
Sbjct: 39 SGWSQCSDSCGQGVRGRTRVCNNPAPGRLGEHCAGKDHEIEQCGERHCPMNGGYTEWSEY 98
Query: 115 FRCNSSCGGGVAER 74
+C+ SCGGGV R
Sbjct: 99 SKCDKSCGGGVRTR 112
>SB_28622| Best HMM Match : CcmD (HMM E-Value=0.55)
Length = 1087
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 127 RPVRREVCECSRRDFECDFGFMLSGEECIQNKSVK 231
RPV C C R+ FGF + C +NK V+
Sbjct: 59 RPVTNVECTCRCRNEAATFGFFNNVWRCTKNKVVR 93
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 27.9 bits (59), Expect = 5.4
Identities = 8/21 (38%), Positives = 15/21 (71%)
Frame = +1
Query: 457 VEGQNNIVAIEFDLKNNCIYW 519
V G+ +V +++D K+N I+W
Sbjct: 315 VSGRKGVVGLDYDYKSNLIFW 335
>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
Length = 1850
Score = 27.5 bits (58), Expect = 7.1
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 245 PSPCIVARASTTSGPRATGK*TVTCAR-SVDTRPTPQISYRVP 370
P P + R S G AT + R S +RP PQ+SYR P
Sbjct: 1590 PPPSLHIRPSDRPGMTATPPPPLPTRRPSSCSRPAPQLSYRPP 1632
>SB_55477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 63
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 304 IDGDVCTISGYTPYA-SDIIPCPLEEPVE 387
IDGD G Y+ SD+IPC +EP E
Sbjct: 22 IDGDDSEEFGKPQYSESDVIPCSADEPGE 50
>SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)
Length = 671
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = -2
Query: 289 WSACSAGPGDNTRGRRKDRT 230
WSACSA GD T+ R DRT
Sbjct: 255 WSACSATCGDGTQSR--DRT 272
>SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1562
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = -3
Query: 375 FKGTRYDI*GVGRVSTDRAHVTVYFPVALGPLVVLARATIHGDGV 241
F R G +V+T HVT + V L V A HGDGV
Sbjct: 1375 FSSIRQRSEGKSKVTTFDLHVTAHASVPLTEDEVFKVAVSHGDGV 1419
>SB_11193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 89 SPTRTVTTESITKDPSGGKSANVAVETSNAIS 184
SP+ TVT E++T P GG + + +ET N+ S
Sbjct: 15 SPS-TVTIENLTAIPVGGSMSLMYIETDNSRS 45
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,077,164
Number of Sequences: 59808
Number of extensions: 381348
Number of successful extensions: 1163
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -