Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS306G05f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 2.0
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 2.0
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 2.0
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 29 2.7
AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical ... 28 4.7
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr... 27 6.2
U00036-2|AAK29859.1| 592|Caenorhabditis elegans Dumpy : shorter... 27 6.2
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 318 HVTVYF-PVALGPLVVLARATIHGDGVRIELHRLI 217
H VY+ P G V +A I G+G++IE H I
Sbjct: 608 HYDVYYVPTEQGATVFVADVAIEGNGIKIEYHSRI 642
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 318 HVTVYF-PVALGPLVVLARATIHGDGVRIELHRLI 217
H VY+ P G V +A I G+G++IE H I
Sbjct: 608 HYDVYYVPTEQGATVFVADVAIEGNGIKIEYHSRI 642
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 318 HVTVYF-PVALGPLVVLARATIHGDGVRIELHRLI 217
H VY+ P G V +A I G+G++IE H I
Sbjct: 608 HYDVYYVPTEQGATVFVADVAIEGNGIKIEYHSRI 642
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = -2
Query: 310 RLFSCSPWSACSAGPGDNTRGRRKDRTSPTYSECTPXXXXXXXXXXRSLDGYIRRLPS*R 131
R ++ W++CS G N + RK S + + R+P R
Sbjct: 1020 RKWNYGEWTSCSETCGSNGKMHRKSYCVDD-SNRRVDESLCGREQKEATERECNRIPCPR 1078
Query: 130 -VFGNRFRCNSSCGGGVAERYS 68
V+G+ C+ SC GGV R++
Sbjct: 1079 WVYGHWSECSRSCDGGVKMRHA 1100
Score = 23.0 bits (47), Expect(2) = 7.9
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 109 CNSSCGGGVAER 74
C+ SCGGGV R
Sbjct: 1554 CSVSCGGGVQRR 1565
Score = 22.2 bits (45), Expect(2) = 7.9
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -2
Query: 289 WSACSAGPGDNTRGRRKDRTSPTYSE 212
WS CSA G R R TS + E
Sbjct: 1498 WSKCSASCGGGWRRRSVSCTSSSCDE 1523
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Frame = -2
Query: 310 RLFSCSPWSACSAGPGDNTRGRRKDRTSPTYSECTPXXXXXXXXXXRSLDGYIRRLPS*R 131
R ++ W++CS G N + RK S + + R+P R
Sbjct: 1020 RKWNYGEWTSCSETCGSNGKMHRKSYCVDD-SNRRVDESLCGREQKEATERECNRIPCPR 1078
Query: 130 -VFGNRFRCNSSCGGGVAERYS 68
V+G+ C+ SC GGV R++
Sbjct: 1079 WVYGHWSECSRSCDGGVKMRHA 1100
Score = 23.0 bits (47), Expect(2) = 7.9
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -2
Query: 109 CNSSCGGGVAER 74
C+ SCGGGV R
Sbjct: 1554 CSVSCGGGVQRR 1565
Score = 22.2 bits (45), Expect(2) = 7.9
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = -2
Query: 289 WSACSAGPGDNTRGRRKDRTSPTYSE 212
WS CSA G R R TS + E
Sbjct: 1498 WSKCSASCGGGWRRRSVSCTSSSCDE 1523
>AF039043-7|AAY86190.1| 103|Caenorhabditis elegans Hypothetical
protein F39C12.4 protein.
Length = 103
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 2/61 (3%)
Frame = +1
Query: 121 YQRPVRREVCECSRRDFECDFGFMLSGEECIQNKSVKFDPYAVPVYCRPGQH--YKRTKG 294
Y R +R C G + EEC + + ++C+ G H Y KG
Sbjct: 30 YGRTIRCSSCGIENEGVCISEGRCCTNEECFMSTECSYSAVCPELFCKIGHHPGYCMKKG 89
Query: 295 Y 297
Y
Sbjct: 90 Y 90
>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical protein
F23D12.2 protein.
Length = 1322
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 410 TKLPASIYPTIQPSTPSKDK 469
TK P S P +QPSTPS +
Sbjct: 1082 TKPPISTIPVVQPSTPSSTR 1101
>U00036-2|AAK29859.1| 592|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 31, isoform a protein.
Length = 592
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -2
Query: 301 SCSPWSACSAGPGDNTRGRRKDRTSPTYSECT 206
S SPW+ACSA G R + RT P + C+
Sbjct: 495 SWSPWTACSATCG-ACGSRMRTRTCPPGNACS 525
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,382,235
Number of Sequences: 27780
Number of extensions: 270716
Number of successful extensions: 768
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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