Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G05f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    27   0.15 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   4.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   4.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   4.4  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   5.8  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   7.7  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 45  RVVCARLEEYLSATPPPHEL 104
           R VC R+E  +   PPP+ L
Sbjct: 477 RAVCGRIENTIQGLPPPYRL 496


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 505 CSSNRILWRLCYFVL 461
           CSS R  W LC  +L
Sbjct: 84  CSSFRFYWDLCMLLL 98



 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +1

Query: 247 VPVYCRPGQHYKR 285
           +P+Y +P +HY+R
Sbjct: 237 IPLYQQPERHYER 249


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 505 CSSNRILWRLCYFVL 461
           CSS R  W LC  +L
Sbjct: 84  CSSFRFYWDLCMLLL 98


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/16 (37%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -2

Query: 490 ILWRLCYFVLRRG-RW 446
           ++W +CYF + +G +W
Sbjct: 215 VVWIMCYFCIWKGVKW 230


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 6/16 (37%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -2

Query: 490 ILWRLCYFVLRRG-RW 446
           ++W +CYF + +G +W
Sbjct: 268 VVWIMCYFCIWKGVKW 283


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 505 CSSNRILWRLCYFVL 461
           CSS R  W LC  +L
Sbjct: 84  CSSFRFYWDLCMLLL 98


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 490 ILWRLCYFVLRRG 452
           ++W LCYF + +G
Sbjct: 182 LVWILCYFCIWKG 194


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 72  YLSATPPPHELLQRNRLPK 128
           Y+S   PPH  L+R   P+
Sbjct: 104 YISQPRPPHPRLRREAEPE 122



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 72  YLSATPPPHELLQRNRLPK 128
           Y+S   PPH  L+R   P+
Sbjct: 160 YISQPRPPHPRLRREAEPE 178


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,159
Number of Sequences: 438
Number of extensions: 3416
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)