Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS306G05f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal hydrolase-r...    29   1.9  
At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal hydrolase-r...    29   1.9  
At5g54170.1 68418.m06745 expressed protein weak similarity to SP...    28   3.3  
At5g51530.1 68418.m06390 ubiquitin carboxyl-terminal hydrolase-r...    28   4.4  
At2g46750.1 68415.m05833 FAD-binding domain-containing protein l...    27   5.8  
At3g62650.2 68416.m07038 expressed protein putative mitochondria...    27   7.7  
At3g62650.1 68416.m07037 expressed protein putative mitochondria...    27   7.7  
At3g59840.1 68416.m06677 expressed protein                             27   7.7  
At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containi...    27   7.7  

>At1g65120.2 68414.m07382 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1147

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 166 DFECDFGFMLSGEECIQNKSVKFDPYAVPVYCRPGQHYKRT 288
           +F+ +F FML  +  ++ K   FD   +   C    HY +T
Sbjct: 466 EFDHEFSFMLLDKRLLRGKIASFDDEGIIDVCDHNVHYTKT 506


>At1g65120.1 68414.m07383 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1121

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 166 DFECDFGFMLSGEECIQNKSVKFDPYAVPVYCRPGQHYKRT 288
           +F+ +F FML  +  ++ K   FD   +   C    HY +T
Sbjct: 466 EFDHEFSFMLLDKRLLRGKIASFDDEGIIDVCDHNVHYTKT 506


>At5g54170.1 68418.m06745 expressed protein weak similarity to
           SP|Q9UKL6 Phosphatidylcholine transfer protein (PC-TP)
           {Homo sapiens}
          Length = 449

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +3

Query: 318 VHDQWIHALRLRYHTVSP*RTS*VHVSST*RQNCPHRFIRQYNHLPRRRTK*HSRHRIRF 497
           V D W  ALR +  TVSP  +S  + SS    +   R  +    LP   T+   RH ++ 
Sbjct: 81  VCDTWTMALRQQRQTVSPDSSSSSYDSSEQHLDLVSRVKKTKERLPNTVTELDLRHLVQL 140

Query: 498 EEQ 506
            E+
Sbjct: 141 VER 143


>At5g51530.1 68418.m06390 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1149

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = +1

Query: 166 DFECDFGFMLSGEECIQNKSVKFDPYAVPVYCRPGQHYKRTKGYRKIDGDVCTISGYTPY 345
           DF+  F F+L  +  ++ K V FD         P  HY +        GD   IS  T Y
Sbjct: 443 DFDPQFSFLLLDKRLLKCKDVPFDDEGTINVFDPNAHYAKAPA----QGD-DIISWLTDY 497

Query: 346 AS--DIIPCPLEE 378
            S   I P P+ E
Sbjct: 498 NSVDTIFPRPIRE 510


>At2g46750.1 68415.m05833 FAD-binding domain-containing protein low
           similarity to SP|P58710 L-gulonolactone oxidase (EC
           1.1.3.8) {Mus musculus}; contains Pfam profile PF01565:
           FAD binding domain
          Length = 591

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 208 CIQNKSVKFDPYAVPVYCRPGQHYKRTKGYRKIDGDVCTI 327
           CI +K     P A    CRPG+ YK  +   ++DG +  I
Sbjct: 553 CICSKDAHCAP-AKGYLCRPGKVYKEARVCTRVDGIISVI 591


>At3g62650.2 68416.m07038 expressed protein putative mitochondrial
           carrier protein At2g47490 - Arabidopsis thaliana,
           EMBL:AC002535
          Length = 152

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 265 PGQHYKRTKGYRKIDGDVCTISG 333
           P ++++R +GY K+DG   T SG
Sbjct: 5   PKRYWRRWRGYEKLDGSSETTSG 27


>At3g62650.1 68416.m07037 expressed protein putative mitochondrial
           carrier protein At2g47490 - Arabidopsis thaliana,
           EMBL:AC002535
          Length = 152

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 265 PGQHYKRTKGYRKIDGDVCTISG 333
           P ++++R +GY K+DG   T SG
Sbjct: 5   PKRYWRRWRGYEKLDGSSETTSG 27


>At3g59840.1 68416.m06677 expressed protein
          Length = 97

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 310 GDVCTISGYTPYASDIIPCPLE 375
           GD  T++GY P + D+ PC  E
Sbjct: 60  GDRVTLAGYCPVSDDLEPCRWE 81


>At1g31430.1 68414.m03849 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 570

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 136 RREVCECSRRDFECDFGFMLSGEECIQNKSVKFDPYAVPVYC 261
           + E C C   D  C  G +   EE I     + D   VPVYC
Sbjct: 415 KSEHCSCLI-DLLCRAGLLDEAEELIDKMRGESDETLVPVYC 455


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,628,337
Number of Sequences: 28952
Number of extensions: 248701
Number of successful extensions: 655
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)